DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.430e-13
Identity = 36/97 (37.11%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  209 TVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            +V++RGA+  ++++ ER+L DA+ V R ++    L+ GGGA E+ +S  L +++ S+EG++ + ++  A A E IP TLA N G+N  + +T L  K
Sbjct:  376 SVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSK 472          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.481e-12
Identity = 49/155 (31.61%), Postives = 84/155 (54.19%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD--PKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCG 460
            L+  G+ A+R +   +   +A   G  IV   ++L+ESD+G        + +G E    IV   +   KA T+L+RGA+  ++ + +R++RDA+   RNI+ N ++V GGG++E++ S  L++ ++   G E+        A E IP  LA N G
Sbjct:  308 LMENGLPAVRWVGGHELELLAVHTGGSIVARFEDLEESDLGKAR--VREESLGTENDKIIVVENEGCSKAVTILVRGANDLVIEEAKRSIRDALCAVRNILTNSRIVYGGGSSEMSCSLALERIATGYSGEEREAILGFGRALEEIPLCLARNSG 460          

HSP 2 Score: 20.7866 bits (42), Expect = 1.481e-12
Identity = 12/48 (25.00%), Postives = 21/48 (43.75%), Query Frame = 3
Query:  516 NAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            N  +G+D       DMK+  + D   +       A +   M+LK D++
Sbjct:  479 NFHLGVDCLGDGEQDMKKLGVFDALSSKIRQFQMATQLVTMVLKIDNV 526          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.057e-12
Identity = 42/160 (26.25%), Postives = 86/160 (53.75%), Query Frame = 2
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESD------VGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            +  G  A+RR +K D  RIAK+CG  ++ T   L+  +      +G    + + +   DE    IV   + K+ +++LRGA++ +L+++ER++ D++ + +  + +  +VPGGGA E  +S  L   ++++   ++      A +   +P+ LA N  ++
Sbjct:  302 VEAGCMAVRRCKKEDLKRIAKSCGGTVLITLANLEGEESFDTTALGIADEVVQDRLADDELI--IVKNSNKKSASIILRGANELMLDEMERSIHDSLCIVKRTLESGTIVPGGGAVESALSIYLDNIAATMGSRKQLAISEFAESLLVVPKQLAVNAALD 459          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.509e-12
Identity = 45/145 (31.03%), Postives = 75/145 (51.72%), Query Frame = 2
Query:   56 RIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            R+A   G  IV+T D  Q +  G+   L E   IG++        K  +AC+V+LRGA++ +L++ ER+L DA+ V    +   K V G GA+E+ +S+ +  ++  + G E    EA   A   +P  +  N G++    +T L
Sbjct:  316 RLALVLGGEIVSTFDSPQTAQFGS-CDLIEEIMIGEDRLLRFSGVKLGEACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGRALAQLPTIICDNAGLDSAELVTRL 459          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.817e-12
Identity = 45/163 (27.61%), Postives = 77/163 (47.24%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L  + +  I+ + + +   I K+ G   +   +   E  +G    + E    G++   F       K  ++L RGA+   L + ER+L DA+ V R ++    L+ GGG+ E+  +  L + +  +EG E     A + A E IP TLA N G+N  + +T L
Sbjct:  306 LAKLKIMVIKDIERDEVEFICKSTGCKPIADIESFAEDKLGHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTEL 468          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.021e-11
Identity = 48/168 (28.57%), Postives = 86/168 (51.19%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQ--ESDVGTGAGLFEV---KKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  +RR +K D  RIA+A GA +V++   L+  E+   +  GL +     K  D+    I       + +++LRGA+   L+++ER+L D++SV +  + +  +VPGGG  E  ++  L   ++++   E+      A A   IP+TLA    +N  +  + L  K R
Sbjct:  315 IMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLA----VNAAKDSSELVAKLR 478          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_ENCCU (T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi GN=CCT2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.333e-11
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            G+ AI         R+    G  I++T D + ES  GT   +  V  +G+E        +   A T++L G+SK++L++ ER++ DA+ V   I  +P+++ GGG++E+ ++  L + +  + G E     A + A + IP+ LA N G N
Sbjct:  286 GIQAIEHADFDGVERLNNVLGGKILSTFDNMDESCYGTCESIRNVH-VGNERMIKFSGVRSG-ASTIVLCGSSKEMLDEAERSVHDALCVLAKIKEDPRVIYGGGSSEMAMAVGLNKYAMEVPGAESDAILAFSSALQQIPKILADNGGYN 434          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPQ_YEAST (T-complex protein 1 subunit theta OS=Saccharomyces cerevisiae GN=CCT8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.274e-11
Identity = 48/164 (29.27%), Postives = 85/164 (51.83%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVN-----TPDELQESDVGTGAGLFEVKKI----GDEFFAFIVDCKD-PKACTVLLRGASKDLLNDVERNLRDAMSVARNII--NNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINV 469
            G+  ++   K +  R+ + CGA  +      TP+EL         GL E  K     GD    F  +  +  +  T++LRGA+++ L+D+ER + D ++  + ++  +  KL+PG GATE+ + + + +      GL +   +  A+AFE +PRTLA   G++V
Sbjct:  317 GILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEEL---------GLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDV 471          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_TETTH (T-complex protein 1 subunit eta (Fragment) OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.274e-11
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGA 331
            R+   D  R+ K+ GA++  T + L E  +GT    FE  +IG E +    DC   K+ T++LRG ++  + + ER+L DA+ + R  +   K+VPGGGA
Sbjct:  255 RVDAEDMKRVQKSTGAIVQTTVNGLTEDVLGT-CNQFEEVQIGAERYNLFKDCPHSKSATIILRGGAEQFIAEAERSLNDAIMIVRRCMKANKIVPGGGA 353          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.616e-11
Identity = 44/149 (29.53%), Postives = 73/149 (48.99%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCG 460
            GV +I         R+A   GA IV+T D  +   +GT   L E   IG++           +ACT++LRGA+  +L + ER++ DA+ V    +   + V G G +E+ +S  + + ++   G +    E+ A A   IP  +A+N G
Sbjct:  307 GVMSIEHADFDGIERLALVTGAEIVSTFDHPELVKIGT-CKLIEEVMIGEDKVIRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTVAETRTVLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAKALRQIPTIIANNAG 454          

HSP 2 Score: 22.3274 bits (46), Expect = 2.616e-11
Identity = 13/51 (25.49%), Postives = 25/51 (49.02%), Query Frame = 3
Query:  528 GIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRK 680
            G++   G I + ++  + +        L +A EAA M+++ DDI     R+
Sbjct:  476 GLNMRDGCIGNAEELGVIESFKVKQQVLVSAHEAAEMIMRVDDILRAAPRQ 526          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPD_YEAST2.430e-1337.11T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPE_ENCCU1.481e-1231.61T-complex protein 1 subunit epsilon OS=Encephalito... [more]
TCPA_DICDI2.057e-1226.25T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPB_CAEEL3.509e-1231.03T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPD_SCHPO7.817e-1227.61T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPA_YEAST1.021e-1128.57T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPB_ENCCU1.333e-1129.80T-complex protein 1 subunit beta OS=Encephalitozoo... [more]
TCPQ_YEAST2.274e-1129.27T-complex protein 1 subunit theta OS=Saccharomyces... [more]
TCPH_TETTH2.274e-1136.00T-complex protein 1 subunit eta (Fragment) OS=Tetr... [more]
TCPB_DICDI2.616e-1129.53T-complex protein 1 subunit beta OS=Dictyostelium ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
back to top