DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:1..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 7.951e-31
Identity = 58/162 (35.80%), Postives = 97/162 (59.88%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            G+ A+RR++K+D  +++KA GA +V    +L+  D+G  AG+ E +KI  +   F+ +CK PKA T+L+RG ++ ++ +V R + DA+ V    I + K+V GGGA E+ ++  L+  +  + G E+    A A A E +PRTLA N G++    +  L  K
Sbjct:  304 GILAVRRVKKSDMEKLSKATGANVVTNIKDLKAEDLGE-AGIVEERKIAGDAMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAIGVVACTIEDGKIVAGGGAAEIELAMKLRDYAEGVSGREQLAVRAFADALEVVPRTLAENAGLDAIEMLVKLRAK 464          

HSP 2 Score: 40.4318 bits (93), Expect = 7.951e-31
Identity = 19/57 (33.33%), Postives = 32/57 (56.14%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+ KHA G NA+ G++   G + +M +  + +P       + +A EA  MLL+ DD+
Sbjct:  461 LRAKHAEGNNAYYGLNVFTGDVENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDV 517          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-30
Identity = 63/160 (39.38%), Postives = 101/160 (63.12%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTM 481
            L   G+ A+RR++K+D  ++AKA GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ ++++VER L DA+ V ++I+ + K++ GGGA E+ +S  L + +  + G E+   EA A A + IPRTLA N G++   T+
Sbjct:  305 LAKYGILAVRRVKKSDMEKLAKATGAKIVTNIRDLTPEDLGE-AELVEERKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDILEDGKIIAGGGAAEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETL 463          

HSP 2 Score: 32.7278 bits (73), Expect = 1.035e-30
Identity = 16/45 (35.56%), Postives = 26/45 (57.78%), Query Frame = 3
Query:  525 IGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            IGID   G  +DM ++ + +P       + +A EAA M+L+ DD+
Sbjct:  477 IGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDV 521          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.348e-30
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            G+ A+RR++++D  +IA+A GA IV   ++L+  D+G  A L E +K+G++   FI   K+PK+ T+LLRG  + L+++ ER+L DA+SV  + I + K+V GGGA E  V+  L + +S + G  +   EA A A EA+P+ LAHN G +    +  L
Sbjct:  316 GILAVRRVKRSDIEKIARATGARIVTDIEDLRPEDLGY-AELVEERKVGEDKMVFIEGAKNPKSVTILLRGGFERLVDEAERSLHDALSVVADAIMDGKIVAGGGAVEAEVAKVLYEYASKLPGKTQLAVEAFARAVEALPQALAHNAGHDPIEVLVKL 473          

HSP 2 Score: 38.891 bits (89), Expect = 1.348e-30
Identity = 18/57 (31.58%), Postives = 28/57 (49.12%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+  H    N W G+D + G I DM  + + +P       L  A E A ++L+ DD+
Sbjct:  473 LRSAHEKPENKWYGVDLDTGEIVDMWSRGVLEPMRVKLNALKAATEVASLILRIDDV 529          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.755e-30
Identity = 59/151 (39.07%), Postives = 98/151 (64.90%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            G+ A++R++K+D  RI KA GA +V   D+L   D+G    ++E KKI DE   FI +C+DPKA +++LRG++K +  ++ER L DA+ V  + + + ++V GGGA E+ ++  L++ + +I G E+    A A A E +P+TLA N G++
Sbjct:  302 GIMALKRVKKSDIKRIEKATGARLVTNIDDLTAEDLGEAGVIYE-KKIFDEVLTFIEECRDPKAISIILRGSTKHVAEEMERALEDAIGVVASTLEDREVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLD 451          

HSP 2 Score: 35.039 bits (79), Expect = 1.755e-30
Identity = 18/52 (34.62%), Postives = 30/52 (57.69%), Query Frame = 3
Query:  504 ANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            A+  + ++GID   G I DMK+  + +P       + +A EAA M+L+ DD+
Sbjct:  462 AHEESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDM 513          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.286e-30
Identity = 56/155 (36.13%), Postives = 100/155 (64.52%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            L   G+ A+RR++K+D +++AKA GA IV+T DE+  SD+GT   + +VK +G+++  F+  CK+PKA ++L+RG ++ +++++ER++ D++ V  + + +     GGGAT   ++  L+  +  I G ++   E  A A E IPR LA N G++
Sbjct:  303 LSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVK-VGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLD 456          

HSP 2 Score: 38.1206 bits (87), Expect = 2.286e-30
Identity = 24/72 (33.33%), Postives = 37/72 (51.39%), Query Frame = 3
Query:  483 LPLQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL--TSRKNRPP 692
            L L+ +HA G N   GI+   G I DM +  + +P       + +A EAA M+L+ DD+     +S  + PP
Sbjct:  462 LKLRAEHAKG-NKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSNPP 532          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.418e-29
Identity = 67/162 (41.36%), Postives = 102/162 (62.96%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGI-NVFRTMTALARK 499
            ++ +RRL+KTD +R++K CGA  V+ P++L+E  VG   GLFE  K G+E++     C  PKAC+V++RG +KD+L+++ERN  DA+ VA++I  +PKL PGGGA E+ ++  L Q +   E +E   +   A A   IP  L  N G+ N    +T L +K
Sbjct:  304 ITGLRRLKKTDISRLSKVCGARSVSRPEDLEERHVGVSCGLFEYIKYGEEYYCKFSRCAHPKACSVVIRGPTKDILDELERNFMDAVKVAKSIFISPKLCPGGGAAEMAMAHELMQSAGDNE-VEAEVFSRMASALTIIPSILLENSGVFNPLEAITLLEQK 464          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.450e-29
Identity = 62/160 (38.75%), Postives = 101/160 (63.12%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTM 481
            L   G+ A+RR++K+D  ++AKA GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ ++++VER L DA+ V ++I+ + K++P GGA E+ ++  L + +  + G E+   EA A A + IPRTLA N G++   T+
Sbjct:  305 LAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGE-AELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETL 463          

HSP 2 Score: 29.6462 bits (65), Expect = 1.450e-29
Identity = 15/45 (33.33%), Postives = 25/45 (55.56%), Query Frame = 3
Query:  525 IGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            IG+D   G  +DM ++ +  P       + +A EAA M+L+ DD+
Sbjct:  477 IGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDV 521          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.450e-29
Identity = 61/151 (40.40%), Postives = 97/151 (64.24%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            G+ A+RR++K+D  ++AKA GA IV   D+L   D+G  AGL E +K+  +   F+  CK PKA T+L RG+++ ++ +V R + DA+ V +  +   K+V GGGATE+ ++  L++ + S+ G E+   +A A A E IPRTLA N G++
Sbjct:  306 GILAVRRVKKSDMEKLAKATGARIVTKIDDLTPEDLGE-AGLVEERKVAGDAMIFVEQCKHPKAVTILARGSTEHVVEEVARAIDDAIGVVKCALEEGKIVAGGGATEIELAKRLRKFAESVAGREQLAVKAFADALEVIPRTLAENSGLD 455          

HSP 2 Score: 32.7278 bits (73), Expect = 1.450e-29
Identity = 16/57 (28.07%), Postives = 29/57 (50.88%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+  H        G+D   G + DM ++ + +P       +++A EA+ MLL+ DD+
Sbjct:  463 LRAAHEKEGGEVYGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDV 519          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.458e-29
Identity = 63/160 (39.38%), Postives = 100/160 (62.50%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTM 481
            L   G+ A+RR++K+D  ++AKA GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ ++++VER L DA+ V ++I+ + K+V  GGA E+ +S  L + +  + G E+   EA A A + IPRTLA N G++   T+
Sbjct:  305 LAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGE-AELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETL 463          

HSP 2 Score: 29.261 bits (64), Expect = 2.458e-29
Identity = 15/45 (33.33%), Postives = 25/45 (55.56%), Query Frame = 3
Query:  525 IGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            IG+D   G  +DM ++ +  P       + +A EAA M+L+ DD+
Sbjct:  477 IGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDV 521          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.425e-29
Identity = 62/160 (38.75%), Postives = 100/160 (62.50%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTM 481
            L   G+ A+RR++K+D  ++AKA GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ ++++VER L DA+ V ++I+ + K+V  GGA E+ ++  L + +  + G E+   EA A A + IPRTLA N G++   T+
Sbjct:  305 LAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGE-AELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETL 463          

HSP 2 Score: 29.261 bits (64), Expect = 5.425e-29
Identity = 15/45 (33.33%), Postives = 25/45 (55.56%), Query Frame = 3
Query:  525 IGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            IG+D   G  +DM ++ +  P       + +A EAA M+L+ DD+
Sbjct:  477 IGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDV 521          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
THS_METTL7.951e-3135.80Thermosome subunit OS=Methanococcus thermolithotro... [more]
THS_PYRAB1.035e-3039.38Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSB_AERPE1.348e-3039.62Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
THSA_METTH1.755e-3039.07Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSB_THEAC2.286e-3036.13Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
TCPG_ENCCU1.418e-2941.36T-complex protein 1 subunit gamma OS=Encephalitozo... [more]
THS_DESSY1.450e-2938.75Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THS_METJA1.450e-2940.40Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSB_THEK12.458e-2939.38Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO5.425e-2938.75Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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