DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:1..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.786e-22
Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            R+ + D  R   ACG  I  + + L    +G    +FE  +IG E + F   C   K CT++LRG ++  + + ER+L DA+ + R  I N  +V GGGA E+ +S  L+  S +I G ++    A A A E IPR L  N G +    +  L
Sbjct:  313 RVPEEDLKRTMMACGGSIQTSVNALVPDVLGH-CQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL 464          

HSP 2 Score: 35.039 bits (79), Expect = 8.786e-22
Identity = 19/56 (33.93%), Postives = 29/56 (51.79%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDD 656
            L+ +HA G   W G+D N   I+D  Q  + +P       L  A EAAC+++  D+
Sbjct:  464 LRARHAQGG-MWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDE 518          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.487e-21
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            R+ + D  R   ACG  I  + + L  +DV     +FE  +IG E + F   C   K CT +LRG ++  + + ER+L DA+ + R  I N  +V GGGA E+ +S  L+  S +I G ++    A A A E IPR L  N G +    +  L
Sbjct:  313 RVPEEDLKRTMMACGGSIQTSVNALS-ADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL 464          

HSP 2 Score: 34.2686 bits (77), Expect = 1.487e-21
Identity = 18/56 (32.14%), Postives = 29/56 (51.79%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDD 656
            L+ +HA G   W G+D N   I+D  +  + +P       L  A EAAC+++  D+
Sbjct:  464 LRARHAQGGT-WYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDE 518          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.487e-21
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            R+ + D  R   ACG  I  + + L  +DV     +FE  +IG E + F   C   K CT +LRG ++  + + ER+L DA+ + R  I N  +V GGGA E+ +S  L+  S +I G ++    A A A E IPR L  N G +    +  L
Sbjct:  313 RVPEEDLKRTMMACGGSIQTSVNALS-ADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL 464          

HSP 2 Score: 34.2686 bits (77), Expect = 1.487e-21
Identity = 18/56 (32.14%), Postives = 29/56 (51.79%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDD 656
            L+ +HA G   W G+D N   I+D  +  + +P       L  A EAAC+++  D+
Sbjct:  464 LRARHAQGGT-WYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDE 518          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.856e-21
Identity = 56/153 (36.60%), Postives = 85/153 (55.56%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            R+   D NR+ +A G  I +T  +++   +GT A LFE  +IG E +     C   K CT+LLRG ++ ++ +VER+L DA+ + +  + N  +V GGGATE+ VS  L+  S +I G ++    A A A E IPR L  N G +    +  L
Sbjct:  317 RVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCA-LFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKL 468          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.135e-21
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            R+   D  R+ KA G+++  T + L +  +GT  G+FE ++IG E +    DC   K+ T++LRG ++  + + ER+L DA+ + R  +   K+VPGGGA EL +S  L+  S   EG  +    A A A E IP+T+A N G +  + +  L +K
Sbjct:  313 RVDAEDIKRVQKATGSIVQTTVNGLSQDVLGT-CGMFEEQQIGAERYNLFQDCPHSKSATIILRGGAEQFIAEAERSLNDAIMIVRRCMKANKIVPGGGAIELEISRLLRLHSRKTEGKVQLVINAFAKALEVIPKTIADNAGHDSIQVLNKLRQK 467          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.061e-20
Identity = 51/156 (32.69%), Postives = 81/156 (51.92%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            R+   D  R+ +A GA I NT   +    +GT   LFE  ++G + +     C   +  T++LRG  +  +++ ER+L D++ + R    +  +V GGGA E+ VS  L+  S SIEG ++    A A A E IPR +A N G +    +  L +K
Sbjct:  313 RVPDDDIRRVCRATGAAIQNTTSNIIPDVIGT-CDLFEEVQVGGQRYNLFTGCTMTQTATIILRGGGEQFIDEAERSLHDSIMIVRRARKHRSVVAGGGAIEMEVSKYLRDYSLSIEGKKQLLINAFAKALEVIPRQIADNAGFDSTDILNQLRQK 467          

HSP 2 Score: 31.5722 bits (70), Expect = 2.061e-20
Identity = 18/56 (32.14%), Postives = 26/56 (46.43%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDD 656
            L+ KHA G   W G+D     I D  +  I +P       +  A EA C++L  D+
Sbjct:  464 LRQKHAQGEK-WFGVDIVNEGICDTYESAIWEPSLVKLNSIVAATEATCLILSVDE 518          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.683e-20
Identity = 49/162 (30.25%), Postives = 92/162 (56.79%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            G+ A++ ++++D   +++A GA I ++  +  ESD+G  A L EV+ +G   + FI   K  KA TV+++G++  + ++ ER+L DA +  RN++  P +V GGGA E  ++  L++ +  + G E+  + A A A E     L+   G++    +T +  K
Sbjct:  303 GIIALKNVKRSDIELLSRATGAKIASSMKDANESDLGE-AKLVEVRNLGKNKYLFIQSDK-AKAVTVIIKGSNNMVTDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRENAGKVPGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHK 462          

HSP 2 Score: 31.5722 bits (70), Expect = 2.683e-20
Identity = 24/68 (35.29%), Postives = 32/68 (47.06%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISD-MKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRP 689
            ++ KHANG     GID     I D M + K+ D        L +A EAA  +LK DD+      K +P
Sbjct:  459 IRHKHANGLKN-AGIDIVKARIYDNMLELKVIDSLKVKEQVLKSATEAATAILKIDDMIAAAPAKQQP 525          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 3.501e-20
Identity = 52/159 (32.70%), Postives = 91/159 (57.23%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            G+ A+RR ++ +  R+  ACG V +N+ D+L    +G  AGL     +G+E F FI  C +P++ T+L++G +K  L  ++  +RD +   RN I++  +VPG GA E+ ++  L +   S++G  +   +A A A   IP+ LA N G ++  T+  +
Sbjct:  309 GIVALRRAKRRNMERLTLACGGVALNSFDDLSPDQLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVRNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKI 466          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.671e-20
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            R+   D NR+ +A G  I +T   ++E  +GT    FE ++IG + F     C   K CT++LRG +   + +VER+L DA+ + ++ + N  +V GGGA E+ +S  L+  S +I G ++    A A + E IPR L  N G +
Sbjct:  318 RVAADDLNRVVQAVGGSIQSTCSNIEEKHLGT-CDTFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFD 461          

HSP 2 Score: 27.7202 bits (60), Expect = 7.671e-20
Identity = 14/56 (25.00%), Postives = 31/56 (55.36%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDD 656
            L+ +HA G   W G+D +   +++  ++ + +P    +  + +A EAA ++L  D+
Sbjct:  469 LRMQHAKG-EMWAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDE 523          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.676e-20
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 2
Query:   32 RLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            R+   D  R A A GA++  +   L +  +GT  G+FE  +IG+E +    +C   K+ T++LRG +K  + +VER++ DA+ +    I N ++VPG G+ E+ +S  L+  S SI   E+    + A A E+IPR L+HN G +    +  L +K
Sbjct:  315 RVEDADLKRTANATGALVQTSLFNLNDDVLGT-CGVFEEVQIGNERYNIFKECLKTKSVTIILRGGAKQFIEEVERSINDAIMIVLRCITNSEIVPGAGSIEMQLSKYLRIYSRSICNKEQIVLFSFAKALESIPRHLSHNAGYDSTDILNKLRKK 469          

HSP 2 Score: 25.7942 bits (55), Expect = 7.676e-20
Identity = 16/57 (28.07%), Postives = 28/57 (49.12%), Query Frame = 3
Query:  489 LQGKHANG-ANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDD 656
            L+ KH+   ++ W G+D   G I +     I +        + +A EAAC++L  D+
Sbjct:  466 LRKKHSEQTSDIWYGVDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDE 522          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPH_MOUSE8.786e-2233.99T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPH_PONAB1.487e-2134.64T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN1.487e-2134.64T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPH_YEAST1.856e-2136.60T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPH_TETPY4.135e-2135.26T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPH_DICDI2.061e-2032.69T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
THSG_SULSH2.683e-2030.25Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPZ_PONAB3.501e-2032.70T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPH_SCHPO7.671e-2034.48Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_PLAF77.676e-2033.97T-complex protein 1 subunit eta OS=Plasmodium falc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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