DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.830e-19
Identity = 53/158 (33.54%), Postives = 85/158 (53.80%), Query Frame = 2 
Query:   23 AIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            A+R +   +   IA A G  IV    EL    +G  AGL   K  G   +   +I  C + KA T+ +RG +K ++ + +R++ DA+ VARN+I N  +V GGG+ E++ S  ++  +    G+E++   A A A +AIP  LA N G+    T+T +
Sbjct:  317 AVRWVGGVELELIAIATGGRIVPRFQELSTEKLGK-AGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVV 473

HSP 2 Score: 30.8018 bits (68), Expect = 4.830e-19
Identity = 16/57 (28.07%), Postives = 28/57 (49.12%), Query Frame = 3 
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            ++ +H    N+  GID N    +DMK+Q + +        +  A +   M+LK DD+
Sbjct:  473 VKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDV 529
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.161e-19
Identity = 53/172 (30.81%), Postives = 91/172 (52.91%), Query Frame = 2 
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  G  A+RR+ K D  RIAKA GA +++T   L+  +    + L + +     +I D+    I + K   + +V+LRGA+  + +++ER+L DA+ V + ++ +  +VPGGGA E  +S  L+  ++S+   E+      A +   IP TLA    +N  +  T L  K R
Sbjct:  301 VEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLPVIPNTLA----VNAAQDSTDLVAKLR 468

HSP 2 Score: 31.9574 bits (71), Expect = 8.161e-19
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 3 
Query:  522 WIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL 668
            WIG+D   G   D KQ  + +P       L  A EAA  +L+ DD+  L
Sbjct:  485 WIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 533
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.126e-18
Identity = 50/163 (30.67%), Postives = 89/163 (54.60%), Query Frame = 2 
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L   G+  +RR ++ +  R+  ACG   +N+ ++L    +G    ++E + +G+E + F+   K+P +CTVL++G +K  +  ++  LRD +   +N I +  +VPGGGA ++   A L +   +I G  K   +A A A   +P+TLA N G +   T+  L
Sbjct:  307 LAKAGIMGLRRAKRRNMERLTLACGGTAMNSLEDLTPDCLGHADLVYE-QTLGEEKYTFVEGVKNPFSCTVLIKGPTKHQIEQIKDALRDGLRAVKNTIEDKCVVPGGGAFQIAAYADLMKFKETITGRTKLGIQAFADALLVVPKTLAQNSGFDPMDTIIKL 468
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.795e-18
Identity = 51/161 (31.68%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:   23 AIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            A+R +   +   +A A  A IV    EL +  +GT AGL      G   +    I  C + KA T+ +RG +K ++++ +R L DA+ V RN++ + ++V GGG+ EL  +  + +++  I+G+E++ + A A A E+IP  LA N G+     ++ L  K
Sbjct:  320 AVRWVGGPEIELLAIATNARIVPRFSELSKEKLGT-AGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFADALESIPMALAENSGLAPIDALSDLKAK 479

HSP 2 Score: 31.187 bits (69), Expect = 1.795e-18
Identity = 16/57 (28.07%), Postives = 29/57 (50.88%), Query Frame = 3 
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+ K      + +GID      +DMK+QK+ +   +    ++ A +   M+LK DD+
Sbjct:  476 LKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDV 532
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.795e-18
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 2 
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMT 484
            L+   + A+R +   +   IA A G  IV    EL    +G  AGL +    G   +    I  CK+ +A T+ +RG +K ++ + +R+L DA+ V RN+I + ++V GGGA E++ +  + Q++     LE++   A A A E IP  L+ N G+N  +TMT
Sbjct:  314 LLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMT 475

HSP 2 Score: 27.7202 bits (60), Expect = 1.795e-18
Identity = 16/57 (28.07%), Postives = 27/57 (47.37%), Query Frame = 3 
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            ++ +     N  +GID      +DMKQQ + +        ++ A +   M+LK DDI
Sbjct:  477 VRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.795e-18
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 2 
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMT 484
            L+   + A+R +   +   IA A G  IV    EL    +G  AGL +    G   +    I  CK+ +A T+ +RG +K ++ + +R+L DA+ V RN+I + ++V GGGA E++ +  + Q++     LE++   A A A E IP  L+ N G+N  +TMT
Sbjct:  314 LLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMT 475

HSP 2 Score: 27.7202 bits (60), Expect = 1.795e-18
Identity = 16/57 (28.07%), Postives = 27/57 (47.37%), Query Frame = 3 
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            ++ +     N  +GID      +DMKQQ + +        ++ A +   M+LK DDI
Sbjct:  477 VRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.796e-18
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 2 
Query:   23 AIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            A+R +   +   IA A G  IV    EL    +G  AG+   K  G   E   +I  C + KA TV +RG +K ++ + +R++ DA+ VARN+I N  +V GGGA E+  S  +   +    G+E++   A A A +++P  LA N G+    T++A+
Sbjct:  317 AVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAV 473

HSP 2 Score: 25.7942 bits (55), Expect = 1.796e-18
Identity = 13/44 (29.55%), Postives = 22/44 (50.00%), Query Frame = 3 
Query:  528 GIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            GID N    +DM++Q + +        +  A +   M+LK DD+
Sbjct:  486 GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 529
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.034e-18
Identity = 53/172 (30.81%), Postives = 90/172 (52.33%), Query Frame = 2 
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  G  A+RR+ K D  RIAKA GA I++T   L+  +      L + +     +I D+    I + K   + +++LRGA+  + +++ER+L DA+ V + ++ +  +VPGGGA E  +S  L+  ++S+   E+      A +   IP TLA    +N  +  T L  K R
Sbjct:  301 VEAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLA----VNAAQDSTDLVAKLR 468

HSP 2 Score: 31.9574 bits (71), Expect = 3.034e-18
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 3 
Query:  522 WIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL 668
            WIG+D   G   D KQ  + +P       L  A EAA  +L+ DD+  L
Sbjct:  485 WIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 533
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.034e-18
Identity = 53/172 (30.81%), Postives = 90/172 (52.33%), Query Frame = 2 
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  G  A+RR+ K D  RIAKA GA I++T   L+  +      L + +     +I D+    I + K   + +++LRGA+  + +++ER+L DA+ V + ++ +  +VPGGGA E  +S  L+  ++S+   E+      A +   IP TLA    +N  +  T L  K R
Sbjct:  301 VEAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLA----VNAAQDSTDLVAKLR 468

HSP 2 Score: 31.9574 bits (71), Expect = 3.034e-18
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 3 
Query:  522 WIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL 668
            WIG+D   G   D KQ  + +P       L  A EAA  +L+ DD+  L
Sbjct:  485 WIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 533
[Close]
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMT 484
            L+   + A+R +   +   IA A G  IV    EL    +G  AGL +    G   +    I  CK+ +A T+ +RG +K ++ + +R+L DA+ V RN+I + ++V GGGA E + +  + Q++     LE++   A A A E IP  L+ N G+N  +TMT
Sbjct:  314 LLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMT 475

HSP 2 Score: 27.7202 bits (60), Expect = 3.947e-18
Identity = 16/57 (28.07%), Postives = 27/57 (47.37%), Query Frame = 3 
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            ++ +     N  +GID      +DMKQQ + +        ++ A +   M+LK DDI
Sbjct:  477 VRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPE1_AVESA4.830e-1933.54T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPA_BOVIN8.161e-1930.81T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPZ_DICDI1.126e-1830.67T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPE_CAEEL1.795e-1831.68T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPE_MACFA1.795e-1833.13T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN1.795e-1833.13T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_ARATH1.796e-1833.54T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPA_RAT3.034e-1830.81T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_CRIGR3.034e-1830.81T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPE_PONAB3.947e-1833.13T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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