DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.948e-18
Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   11 VGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            +G+++I         R+A   G  +V+T DE  +  +G    + E   +G++ F     CK  +ACT++LRGA+   L++ ER+L DA+SV        + V GGG  E+ +S  +  ++ +I+G +    EA A A   +P  LA N G +
Sbjct:  301 LGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGE-CDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFD 451          

HSP 2 Score: 31.5722 bits (70), Expect = 3.948e-18
Identity = 17/44 (38.64%), Postives = 28/44 (63.64%), Query Frame = 3
Query:  528 GIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            G+D N G I+DM+Q  I + +      +++A EAA +LL+ D+I
Sbjct:  471 GLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNI 514          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 4.279e-18
Identity = 51/161 (31.68%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            + A+RR ++ +  R+  ACG + VN+ + L E  +G    +FE   +G+E F FI DC +P + T+L++G +K  L  ++  LRD +   +N I +  +VPG GA E+ ++  L      ++G  +   +A A A   IP+ LA N G ++  T+  +  K
Sbjct:  310 IVALRRAKRRNLERLTLACGGLAVNSFEGLSEECLGHAGLVFEYA-LGEEKFTFIEDCVNPLSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQGRVRLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTK 469          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 4.279e-18
Identity = 52/156 (33.33%), Postives = 89/156 (57.05%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTM 481
            G+ A+RR ++ +  R++ ACG + VN+ ++L    +G  AGL     +G+E F FI +C +P + T+L++G +K  L  V+  +RD +   +N I +  +VPG GA E+ ++  L    +SI+G  +   +A A A   IP+ LA N G +   T+
Sbjct:  309 GIVALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLGH-AGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQAFADALLIIPKVLAQNAGYDPQETL 463          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.128e-18
Identity = 50/166 (30.12%), Postives = 92/166 (55.42%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGA-------GLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            G+ A+RR +K+D   +    GA +V+  D ++ + +G  +        LF V+ IGD          D    T+LLRG++  +++++ER ++DA+ V  + + + +++ GGGA E+ +++ L+  + S+ G E+   EA A A E +PR LA N G++   T+  L
Sbjct:  312 GILAVRRTKKSDIRFLKNITGAAVVSDLDSIEAAVLGRASVRRDEAGELFYVEGIGD----------DVHGVTLLLRGSTDHVVDELERGVQDALDVVASTVADGRVLAGGGAIEVELASRLRNYADSVSGREQLAVEAYADALELVPRVLAENAGLDSIDTLVDL 467          

HSP 2 Score: 26.1794 bits (56), Expect = 5.128e-18
Identity = 17/57 (29.82%), Postives = 28/57 (49.12%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+  H +G     G++   G + D     + +  HA    + +A EAA ++LK DDI
Sbjct:  467 LRAAHEDG-QVRAGLNVFTGEVEDAFDAGVVETAHAKEQAVASASEAANLVLKIDDI 522          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.299e-18
Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L + G+ A+RR ++ +  R+  A G   VN+ D+L   D+G  AGL     +G+E + FI +C+ PK+ T+L++G +K  +  ++  + D +    N I +  ++PG  A E+     LK+   +++G  K   EA A A   IP+TLA N G +   T+  L
Sbjct:  309 LASEGILALRRAKRRNMERLQLAVGGEAVNSVDDLTPEDLGW-AGLVYEHSLGEEKYTFIEECRAPKSVTLLIKGPNKHTITQIKDAIHDGLRAVFNTIVDKAVLPGAAAFEIAAYVMLKKDVENLKGRAKLGAEAFAQALLVIPKTLAVNGGYDAQETLVKL 470          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.674e-18
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMT 484
            L+  G+ A+R +   +   IA A G  IV    EL    +G  AG+ +    G   +    I  CK+ +A T+ +RG +K ++ + +R+L DA+ V RN+I + ++V GGGA E++ +  + Q++     LE++   A A A E IP  L+ N G+N  +TMT
Sbjct:  314 LLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGF-AGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMT 475          

HSP 2 Score: 24.2534 bits (51), Expect = 8.674e-18
Identity = 14/57 (24.56%), Postives = 27/57 (47.37%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            ++ +    +N  +GID      +DM+ Q + +        ++ A +   M+LK DDI
Sbjct:  477 VRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-17
Identity = 52/162 (32.10%), Postives = 87/162 (53.70%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVK-KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMT 484
            L+  G+ A+R +   +   IA A G  IV    EL    +G    + E+      +    I  CK+ +A T+ +RG +K ++ + +R+L DA+ V RN+I + ++V GGGA E++ +  + Q++     LE++   A A A E IP  L+ N G+N  +TMT
Sbjct:  314 LLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMT 475          

HSP 2 Score: 24.2534 bits (51), Expect = 1.128e-17
Identity = 14/57 (24.56%), Postives = 27/57 (47.37%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            ++ +    +N  +GID      +DM+ Q + +        ++ A +   M+LK DDI
Sbjct:  477 VRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.128e-17
Identity = 46/164 (28.05%), Postives = 85/164 (51.83%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L  + +  I+ + + D    ++  G   V + D      +G    + E+   GD     +   ++P  A ++LLRG++K +L + +R++ DA+ V R ++    L+PGGGA E+ ++  L+  + +  G  ++ + A A A E IP TLA N G++   T+T L
Sbjct:  317 LAKMKIMCIKDIEREDIEFYSRILGCRPVASVDHFNADALGYADLVEEIPTGGDGKVIKVTGVQNPGHAVSILLRGSNKLVLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRAFADALELIPYTLAENAGLSPIHTVTEL 480          

HSP 2 Score: 34.2686 bits (77), Expect = 1.128e-17
Identity = 19/57 (33.33%), Postives = 30/57 (52.63%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+  HANG N+  G++   G ++DM ++ +  P    A  +  A E    +LK DDI
Sbjct:  480 LRNNHANG-NSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDI 535          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.245e-17
Identity = 48/156 (30.77%), Postives = 87/156 (55.77%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTM 481
            G+ A+RR ++ +  R+  ACG   +N+ ++L    +G  AGL     +G+E + FI  C +P++ T+L+RG +K  L  ++  +RD +   +N I +  ++PG GA E+ V+  L +   +++G  +   +A A A   IP+ LA N G +   T+
Sbjct:  308 GIVALRRAKRRNMERLTLACGGTAMNSVEDLTPDCLGH-AGLVYEYTLGEEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNAIEDGCVIPGAGALEVAVANALVKHKPNVKGRAQLGVQAFADALLIIPKVLAQNSGYDPQETL 462          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.465e-17
Identity = 50/172 (29.07%), Postives = 90/172 (52.33%), Query Frame = 2
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  G  A+RR+ K D  RIAKA GA + +T   L+  +    + L + +     ++ D+    I + K   + +++LRGA+  + +++ER++ DA+ V + ++ +  +VPGGGA E  +S  L+  ++S+   E+      A +   IP TLA    +N  +  T L  K R
Sbjct:  304 VDAGAMAVRRVLKKDLKRIAKASGATVCSTLANLEGEESFEASMLGQAEEVVQERVCDDELILIKNTKARTSASIILRGANDFMCDEMERSIHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLA----VNAAQDATDLVAKLR 471          

HSP 2 Score: 31.9574 bits (71), Expect = 1.465e-17
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 3
Query:  522 WIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL 668
            WIG+D   G   D KQ  + +P       L  A EAA  +L+ DD+  L
Sbjct:  488 WIGLDLINGKPRDNKQAGVFEPTLVKTKSLKFATEAAITILRIDDLIKL 536          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPB_YEAST3.948e-1830.92T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPW_MOUSE4.279e-1831.68T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPW_HUMAN4.279e-1833.33T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
THS2_HALVO5.128e-1830.12Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPZ_CAEEL7.299e-1831.90T-complex protein 1 subunit zeta OS=Caenorhabditis... [more]
TCPE_MOUSE8.674e-1833.13T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_RAT1.128e-1732.10T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPD_CAEEL1.128e-1728.05T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
TCPZ_CHICK1.245e-1730.77T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPA_PALPA1.465e-1729.07T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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