DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:1..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.905e-17
Identity = 54/178 (30.34%), Postives = 89/178 (50.00%), Query Frame = 2
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIG-----------DEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  G  A+RR+ K D   +AKA GA I++T   L+      G   FEV  +G           D+    I + K   + +++LRGA+  + +++ER+L DA+ V + ++ +  +VPGGGA E  +S  L+  ++S+   E+      A +   IP TLA    +N  +  T L  K R
Sbjct:  301 VEAGAMAVRRVLKRDLKCVAKASGATILSTLANLE------GEETFEVTMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLA----VNAAQDSTDLVAKLR 468          

HSP 2 Score: 31.9574 bits (71), Expect = 1.905e-17
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 3
Query:  522 WIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL 668
            WIG+D   G   D KQ  + +P       L  A EAA  +L+ DD+  L
Sbjct:  485 WIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 533          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.906e-17
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            L  + +  I+ + + D   I    G   V   D      +G  A L E     D     +    +P K  TVL RG++K +L++ ER+L DA+ V R+++    L+ GGGA E+ VS  +   S ++ G+  +   A A A E IP TLA N G++    +T L  K
Sbjct:  312 LAKLKILVIKDIERDDIEFICNTIGCQPVANIDSFTADKLGK-ADLVEEVGTSDGKIVKVTGIPNPGKTVTVLCRGSNKLVLDEAERSLHDALCVIRSLVKKKFLIAGGGAPEIEVSQQVTAFSKTLTGITSYCVRAYAEALEIIPYTLAENAGLHPISIVTELRNK 477          

HSP 2 Score: 35.039 bits (79), Expect = 1.906e-17
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 3
Query:  489 LQGKHANGA-NAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+ KHA G  N+  GI+   GAI+++ Q+ +  P   +   L  A E   MLLK DDI
Sbjct:  474 LRNKHAQGEINS--GINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDI 529          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-17
Identity = 52/166 (31.33%), Postives = 89/166 (53.61%), Query Frame = 2
Query:   23 AIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            A+RR+ K D  RIAKA GA I++T   L+  +    + L + +     +I D+    I + K   + +++LRGA+  + +++ER+L DA+ V + ++ +  +VPGGGA E  +S  L+  ++S+   E+      A +   IP TLA    +N  +  T L  K R
Sbjct:  307 AVRRVLKRDLKRIAKASGATILSTLASLEGEESFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLA----VNAAQDSTDLVAKLR 468          

HSP 2 Score: 31.187 bits (69), Expect = 3.219e-17
Identity = 17/49 (34.69%), Postives = 24/49 (48.98%), Query Frame = 3
Query:  522 WIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL 668
            WIG+D   G   D +Q  + +P       L  A EAA  +L+ DD+  L
Sbjct:  485 WIGLDLVNGKPRDNRQTGVFEPTMVKVKSLKFATEAAITILRIDDLIKL 533          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 4.185e-17
Identity = 54/178 (30.34%), Postives = 88/178 (49.44%), Query Frame = 2
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIG-----------DEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  G  A+RR+ K D   +AKA GA I++T   L+      G   FEV  +G           D+    I + K   + +++LRGA+  + +++ER+L DA+ V + ++    +VPGGGA E  +S  L+  ++S+   E+      A +   IP TLA    +N  +  T L  K R
Sbjct:  301 VEAGAMAVRRVLKRDLKHVAKASGASILSTLANLE------GEETFEVTMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLA----VNAAQDSTDLVAKLR 468          

HSP 2 Score: 31.9574 bits (71), Expect = 4.185e-17
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 3
Query:  522 WIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL 668
            WIG+D   G   D KQ  + +P       L  A EAA  +L+ DD+  L
Sbjct:  485 WIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 533          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.186e-17
Identity = 49/165 (29.70%), Postives = 90/165 (54.55%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L+   + A+R +   +   IA A    IV   ++L    +G+ AG+      G   +    I  C + +A TV +RG++K ++++ +R L DA+ V RN+I + ++V GGGA E++ S  + +++  I G++++   A A A + IP  LA N G++    +TA+
Sbjct:  316 LLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGS-AGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAV 479          

HSP 2 Score: 30.0314 bits (66), Expect = 4.186e-17
Identity = 17/57 (29.82%), Postives = 29/57 (50.88%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            ++ +H     A++GID      +DM++Q + DP       L  A +   M+LK +DI
Sbjct:  479 VKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDI 535          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.731e-17
Identity = 49/161 (30.43%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQK--SSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            G+ A+RR ++ +  R+  ACG V  N+ D+L    +G    ++E + +G+E + F+ D KDPK+ T+L+ G +   +  ++   RD +   +N + +  L+ G GA E+  +A L+ K  +  ++G  K    A A A   IP+TLA N   +    + AL
Sbjct:  308 GIMALRRAKRRNMERLQLACGGVAQNSVDDLNPEVLGWAGSVYE-RTLGEEKYTFVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKNAVEDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYADALLIIPKTLAANSSYDTQDAIVAL 467          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.442e-17
Identity = 43/159 (27.04%), Postives = 86/159 (54.09%), Query Frame = 2
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAF--IVDCKDPK---ACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            + V   A+RR +K D   +AKA G  ++ +  +++  +V     L   +++  E      ++  + PK   + +++LRGA+   ++++ER+L DA+ V + ++ + ++VPG GA E  VS  L+  + ++   E+      A A  +IP+ LA N G++
Sbjct:  298 VEVNAMAVRRCKKVDLKNMAKATGGQLIVSLADMEGDEVFDPTKLGNAEEVSQERICDDELIILRGPKVHPSASIILRGANDFYVDEMERSLHDALLVVKRVLESKRIVPGAGACETAVSIYLENYALTLSSREQLAIAEFARAMLSIPKQLAVNAGVD 456          

HSP 2 Score: 35.4242 bits (80), Expect = 5.442e-17
Identity = 20/63 (31.75%), Postives = 30/63 (47.62%), Query Frame = 3
Query:  492 QGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRK 680
            Q K     N W G+D N   ++D K+  + +P  +    L  A EAA  +L+ DD+  L   K
Sbjct:  472 QSKPDQAHNKWWGLDLNNQYVADCKEIGVFEPLVSKIKSLKFATEAAITILRIDDLIKLKEEK 534          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.195e-16
Identity = 53/173 (30.64%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFA-----FIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +I  G  A+RR +K D  RIAKA GA ++++   L+  +    + L   +++  E F+      +   K   + +++LRG ++  L+++ER++ D++SV +  + + K+VPGGGA E  +S  L+  ++S+   E+      A A   IPRTLA    +N  +  T L  K R
Sbjct:  305 IIEAGAMAVRRCKKEDLRRIAKASGATLLSSLSNLEGEETFESSYLGSAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQALLIIPRTLA----VNAAKDSTELTAKLR 473          

HSP 2 Score: 23.483 bits (49), Expect = 1.195e-16
Identity = 12/42 (28.57%), Postives = 21/42 (50.00%), Query Frame = 3
Query:  528 GIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKND 653
            G+D   G I D  +  + +P  +    L +A+EA   +L+ D
Sbjct:  496 GLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRID 537          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.798e-16
Identity = 48/165 (29.09%), Postives = 91/165 (55.15%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAF--IVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L  +G+  I+ + + +   ++K+ G   ++  +   E  +G+   + E+   G +   F  +         +V++RGA+  +L++ ER+L DA+ V R ++    L+ GGGA E+ +S  L+++S S+EG+E + ++  A A E IP TLA N G+N  + +T L
Sbjct:  306 LAKLGIMVIKDIEREEIEFLSKSLGCKPISDVELFTEDRLGSADLVEEIDSDGTKIVKFSGVKGVNAKPTVSVIIRGANSMILDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLERESRSMEGVEAYIWQEFAQALEVIPTTLAENAGLNSIKVITEL 470          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.020e-16
Identity = 47/167 (28.14%), Postives = 92/167 (55.09%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIG----DEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L+   + A+R +   D  +IA A G  IV   +++    +G  AGL  V+++G     + +  I DC +  A T+ +RG +K ++ + +R++ DA+ V RN+I + +++ GGG++E++    +   +  I  +E++   A A A +AIP  LA N G+    +++ +
Sbjct:  310 LLQNNLPAVRWVGGLDLEKIAMATGGRIVARFEDVSADKLGR-AGL--VREVGFGTTQDRYLSIEDCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAFADALDAIPLALAENSGLPSIESLSTV 473          

HSP 2 Score: 27.335 bits (59), Expect = 2.020e-16
Identity = 17/48 (35.42%), Postives = 22/48 (45.83%), Query Frame = 3
Query:  516 NAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            N  +GID N    +DMK Q + D           A +   M+LK DDI
Sbjct:  482 NPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDI 529          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPA1_MOUSE1.905e-1730.34T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPD_DICDI1.906e-1731.14T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPA_MONDO3.219e-1731.33T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA2_MOUSE4.185e-1730.34T-complex protein 1 subunit alpha B OS=Mus musculu... [more]
TCPE_SCHPO4.186e-1729.70T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPZ_SCHPO4.731e-1730.43T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]
TCPA_SCHMA5.442e-1727.04T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPA_SCHPO1.195e-1630.64T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPD_CANGA1.798e-1629.09T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPE_DICDI2.020e-1628.14T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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