DY259926

Overview
NameDY259926
Unique NameDY259926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259926_ssr691 microsatellite DY259926_ssr691:691..702. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1359 contig Ccv1_Contig1359:1..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX6_ORYSJ (WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. japonica GN=WOX6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.131e-11
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  275 SGGGHKISA-----RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 490
            SGGG   SA     R RWTP P Q+ ILESIF+ G   P K +   I   L + G + + NV+ WFQNRR+RS+R+Q
Sbjct:   26 SGGGGGRSAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 102          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX6_ORYSI (WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. indica GN=WOX6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.131e-11
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  275 SGGGHKISA-----RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 490
            SGGG   SA     R RWTP P Q+ ILESIF+ G   P K +   I   L + G + + NV+ WFQNRR+RS+R+Q
Sbjct:   26 SGGGGGRSAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 102          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX12_ORYSJ (WUSCHEL-related homeobox 12 OS=Oryza sativa subsp. japonica GN=WOX12 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.131e-11
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  266 LMTSG---GGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 487
            L++SG   G      + RW P P Q++ILE IF+ G   P + +I+ I ++L ++GQ+ + NV+ WFQNR++R+K K
Sbjct:   55 LLSSGCEEGTRNPEPKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTKNK 131          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX10_ORYSJ (WUSCHEL-related homeobox 10 OS=Oryza sativa subsp. japonica GN=WOX10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.131e-11
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  275 SGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR--KQLVSSSANTLH 520
            SGGG    AR RW P P Q+ ILESIF+ G   P+K +   I   L + G + + NV+ WFQNRR+RS+R  +QL  +    LH
Sbjct:   34 SGGGEP--ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRRARQLQQACGAALH 115          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX10_ORYSI (WUSCHEL-related homeobox 10 OS=Oryza sativa subsp. indica GN=WOX10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.131e-11
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  275 SGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR--KQLVSSSANTLH 520
            SGGG    AR RW P P Q+ ILESIF+ G   P+K +   I   L + G + + NV+ WFQNRR+RS+R  +QL  +    LH
Sbjct:   34 SGGGEP--ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRRARQLQQACGAALH 115          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX11_ARATH (WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana GN=WOX11 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.291e-11
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 2
Query:  263 PLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 490
            P   SG       R RW+P P Q+ ILESIF  G   P K++   I   L + G + + NV+ WFQNRR+RS+R+Q
Sbjct:   18 PSSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 93          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX11_ORYSJ (WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. japonica GN=WOX11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.331e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 2
Query:  302 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 490
            R RWTP P Q+ ILESIF+ G   P K +   I   L + G + + NV+ WFQNRR+RS+R+Q
Sbjct:   20 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 82          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX12_ARATH (WUSCHEL-related homeobox 12 OS=Arabidopsis thaliana GN=WOX12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.575e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  302 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSANT 514
            R RW+P P Q+ ILESIF+ GT  P K +   I   L + G + + NV+ WFQNRR+RS+R+     +A T
Sbjct:   19 RARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRHRQLLAATT 89          
The following BLAST results are available for this feature:
BLAST of DY259926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
WOX6_ORYSJ1.131e-1148.05WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. ... [more]
WOX6_ORYSI1.131e-1148.05WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. ... [more]
WOX12_ORYSJ1.131e-1140.26WUSCHEL-related homeobox 12 OS=Oryza sativa subsp.... [more]
WOX10_ORYSJ1.131e-1145.24WUSCHEL-related homeobox 10 OS=Oryza sativa subsp.... [more]
WOX10_ORYSI1.131e-1145.24WUSCHEL-related homeobox 10 OS=Oryza sativa subsp.... [more]
WOX11_ARATH3.291e-1143.42WUSCHEL-related homeobox 11 OS=Arabidopsis thalian... [more]
WOX11_ORYSJ7.331e-1149.21WUSCHEL-related homeobox 11 OS=Oryza sativa subsp.... [more]
WOX12_ARATH9.575e-1145.07WUSCHEL-related homeobox 12 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259926 ID=DY259926; Name=DY259926; organism=Citrus clementina; type=EST; length=1067bp
TAATATTAGAGAATTAGCGCAGCAGGAGACCCAAACCCAGAACCAGAACC
AGAACCAGAGAGGAGGAGAGAATGATAATAATAACGTTGTAAATGGAGTA
ATGTATGTGAAAGTGATGACTGATGAGCAACTCGAGACTTTGAGGAAGCA
GATTGCTGTCTATGCTACTATTTGCGAGCAACTTGTTGAGATGCATAAAT
CACTCTCTGCCCACCAAGATCTTGCAGCAGCAGGAGGGCGGCTGGGGAAT
ATATACTGTGACCCATTAATGACATCTGGTGGTGGGCACAAGATCAGTGC
CAGACAGAGATGGACTCCAACTCCAGTTCAGCTTCAAATTCTGGAGAGCA
TTTTTGATCAAGGGACTGGGACTCCAAGCAAGCAAAAGATCAAAGAGATT
ACAGTTGAACTCAGTCAGCACGGCCAAATCTCCGAAACTAATGTCTACAA
TTGGTTCCAAAATAGGCGTGCTCGATCCAAAAGGAAGCAGTTAGTGTCTT
CTTCTGCCAACACTCTTCATAATGGTGGTGGTGCTGGTGCTGGTGGTGCT
GATTCAGAAGTAGAGACTGAGGTTGATTCTCTGCTGCTGCATGACGAACA
CAAGACCACTAAACCAGAGAATCTTTCTTCTGCTCATTCTACCTCTCAAC
CTCAACACTTACGCAACCTCCCTCCGACTCCAAGGCCTCGTGATGATGAT
GACGACCCTATGTGCTTTCACACCCCTGCCGACATTTCTTCCTCCTCATT
GCATTTCTTGGGTGTGTTTTCTAATAATCCGAGAGATGATCATTTAACAG
GAAAGAAGGGTGGAATGCCAGGGAACTTATATCTTTATGATCATGCAAAA
AACAACAGCAGGGCTGGGTTAACCTCATTCCGGTTCCATTAATCCCCCCA
AAAAACCCTTGTCCACCCCACAAACCGGGCCGGGAGGCTGGACCTTCTCC
TCCTTGTTTAATTCCCCCAAACCATATGGAGCGGGTGGGTTCTCAACCCA
AAAAAAAAGGGAATCCTTTCCCCGATAGGGGCTGGCCGGGCTTTGGCCTT
GATCCCATTTTGAAATG
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