DY259940
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H8_ORYSJ (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 9.050e-13 Identity = 37/108 (34.26%), Postives = 49/108 (45.37%), Query Frame = 1 Query: 253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSG 576 YP RP A C FYMKTG CKF CKF+HP+ R + EE ++ C +YM++G C++G C+F+HP P S SG Sbjct: 364 YPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVV----------CAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSG 461 HSP 2 Score: 72.0182 bits (175), Expect = 7.661e-12 Identity = 51/204 (25.00%), Postives = 75/204 (36.76%), Query Frame = 1 Query: 253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSGYGNGGSVSSQAPAQASIGSWSSPMALNEPAPFVPMMYSPTPGVPSHNYEWNGVSSPPLSHHKGACSPPPRMSKTKTPGWRMAR*FLHPQRLVEGLP 864 YP + DC F+MKTG CKFGS CKFNHP + N + ++ + + C +Y ++G C++ A C+FNHP + S N + + IGS + ++ P + G+P G P G+C + T F HP RLV P Sbjct: 153 YPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPL------------CSFYAKTGKCKFRAMCKFNHPKDIEIPSSQ------NEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMR----PGEVDCPFYMKMGSC----KFGSTCR--------FNHPDRLVLNFP 322
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 1.544e-12 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVK-EREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP-DPTAVGGSDS 567 YP R DC +Y++TG C+FGS C+FNHP RK + ++K E E I +P EC +Y+++G+C++G C+F+HP + + GS S Sbjct: 39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQP---------------------ECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVS 124
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 5.866e-12 Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 1 Query: 253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDS 567 YP RP A DC +YM+TG C +G+ C++NHP R S + V+ + ER C +Y+++G+C++GA+C+F+H P GGS S Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHP--RDRASVEATVRATGQYPER------------------FGEPPCQFYLKTGTCKFGASCKFHH--PKNAGGSMS 124 HSP 2 Score: 71.633 bits (174), Expect = 1.001e-11 Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 1 Query: 235 MRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP------DPTAVGGSDSP 570 ++K +P RP +C +Y+KTG CKFG++CKF+HP +++V R + P + C +Y+++G C++G+ C+F+HP +P+A +D+P Sbjct: 280 IQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHP--------RDRVPPRANCVLSP-----------IGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHPMGTIRYNPSASSLADAP 378
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H5_ORYSJ (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.707e-11 Identity = 56/206 (27.18%), Postives = 81/206 (39.32%), Query Frame = 1 Query: 256 PVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQ---SSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGG-SDSPSGYG-NGGSVSSQAPAQASIGSWSSPMALNEP----APFVPMMYSPTPGVP---SHNYE----WNGVSSPPL--SHHKGACSPPPRMSKTKTP--GW 813 P RP DC +Y++TG C +G NC++NHP R + K E ERP C YYM++G+C++G+NC+++HP +V + SGY G + + S + P P MY P P SH Y+ W + PP+ PP + T P GW Sbjct: 49 PERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPV------------------CEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLAGWQ-MGRPPVLPGSFLSGSYPPMMLPSTVVPMQGW 235
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H42_ORYSJ (Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa subsp. japonica GN=Os06g0519400 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.229e-11 Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1 Query: 253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP 537 YP RP DC++Y++ G+CKFG C +NHP + K + +R +C +Y+R G C+YG NCRFNHP Sbjct: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCDKLEHPQRP------------------------GEHDCLHYLRFGRCKYGMNCRFNHP 146 The following BLAST results are available for this feature:
BLAST of DY259940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY259940 ID=DY259940; Name=DY259940; organism=Citrus clementina; type=EST; length=1182bpback to top |