DY259940

Overview
NameDY259940
Unique NameDY259940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1182
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1362 contig Ccv1_Contig1362:1..1182. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H8_ORYSJ (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 9.050e-13
Identity = 37/108 (34.26%), Postives = 49/108 (45.37%), Query Frame = 1
Query:  253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSG 576
            YP RP A  C FYMKTG CKF   CKF+HP+ R         +  EE ++                        C +YM++G C++G  C+F+HP P       S SG
Sbjct:  364 YPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVV----------CAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSG 461          

HSP 2 Score: 72.0182 bits (175), Expect = 7.661e-12
Identity = 51/204 (25.00%), Postives = 75/204 (36.76%), Query Frame = 1
Query:  253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSGYGNGGSVSSQAPAQASIGSWSSPMALNEPAPFVPMMYSPTPGVPSHNYEWNGVSSPPLSHHKGACSPPPRMSKTKTPGWRMAR*FLHPQRLVEGLP 864
            YP +    DC F+MKTG CKFGS CKFNHP  + N  +     ++  + +                        C +Y ++G C++ A C+FNHP    +  S       N    +     +  IGS +  ++     P        + G+P       G    P     G+C    +   T          F HP RLV   P
Sbjct:  153 YPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPL------------CSFYAKTGKCKFRAMCKFNHPKDIEIPSSQ------NEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMR----PGEVDCPFYMKMGSC----KFGSTCR--------FNHPDRLVLNFP 322          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.544e-12
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVK-EREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP-DPTAVGGSDS 567
            YP R    DC +Y++TG C+FGS C+FNHP  RK   +  ++K E  E I +P                     EC +Y+++G+C++G  C+F+HP +   + GS S
Sbjct:   39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQP---------------------ECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVS 124          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.866e-12
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDS 567
            YP RP A DC +YM+TG C +G+ C++NHP  R   S +  V+   +  ER                       C +Y+++G+C++GA+C+F+H  P   GGS S
Sbjct:   42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHP--RDRASVEATVRATGQYPER------------------FGEPPCQFYLKTGTCKFGASCKFHH--PKNAGGSMS 124          

HSP 2 Score: 71.633 bits (174), Expect = 1.001e-11
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 1
Query:  235 MRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP------DPTAVGGSDSP 570
            ++K   +P RP   +C +Y+KTG CKFG++CKF+HP        +++V  R   +  P                    + C +Y+++G C++G+ C+F+HP      +P+A   +D+P
Sbjct:  280 IQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHP--------RDRVPPRANCVLSP-----------IGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHPMGTIRYNPSASSLADAP 378          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H5_ORYSJ (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.707e-11
Identity = 56/206 (27.18%), Postives = 81/206 (39.32%), Query Frame = 1
Query:  256 PVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQ---SSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGG-SDSPSGYG-NGGSVSSQAPAQASIGSWSSPMALNEP----APFVPMMYSPTPGVP---SHNYE----WNGVSSPPL--SHHKGACSPPPRMSKTKTP--GW 813
            P RP   DC +Y++TG C +G NC++NHP  R      +   K     E  ERP                      C YYM++G+C++G+NC+++HP   +V     + SGY    G        +     + S    + P        P MY P    P   SH Y+    W  +  PP+          PP  +  T  P  GW
Sbjct:   49 PERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPV------------------CEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLAGWQ-MGRPPVLPGSFLSGSYPPMMLPSTVVPMQGW 235          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H42_ORYSJ (Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa subsp. japonica GN=Os06g0519400 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.229e-11
Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1
Query:  253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP 537
            YP RP   DC++Y++ G+CKFG  C +NHP +      K +  +R                            +C +Y+R G C+YG NCRFNHP
Sbjct:   76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCDKLEHPQRP------------------------GEHDCLHYLRFGRCKYGMNCRFNHP 146          
The following BLAST results are available for this feature:
BLAST of DY259940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
C3H8_ORYSJ9.050e-1334.26Zinc finger CCCH domain-containing protein 8 OS=Or... [more]
C3H57_ARATH1.544e-1234.58Zinc finger CCCH domain-containing protein 57 OS=A... [more]
C3H32_ARATH5.866e-1234.29Zinc finger CCCH domain-containing protein 32 OS=A... [more]
C3H5_ORYSJ1.707e-1127.18Zinc finger CCCH domain-containing protein 5 OS=Or... [more]
C3H42_ORYSJ2.229e-1133.68Zinc finger CCCH domain-containing protein 42 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YL08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259940 ID=DY259940; Name=DY259940; organism=Citrus clementina; type=EST; length=1182bp
CCACCGTCCGATCTTGATTACACTGCAGGAATTGAGGAAGAGCTGCGAAA
TCTCGATTTGAGAGAGGCGGAAGAGATAGATTCAATCAAAGCAGCGGAAA
TAGAAATAGTAGTTGAAGAAGAAGACGAAGAGGAAGAGGAAGAGGAAGAG
GAAGAAAGCGAGAGTGATGAAAACCATAAAAGTAACCTTATAGTTCAGAA
TGAGATTCAAAATGAGAATGAGTATGGAAATCAAATGAGAAAAAGGTATC
CCTATCCAGTGAGACCCGACGCTCAAGATTGTACTTTTTATATGAAAACA
GGTACCTGCAAGTTTGGGTCCAATTGTAAGTTTAATCATCCTGTTCGTAG
AAAAAACCAGTCTTCTAAAGAGAAGGTGAAGGAAAGAGAGGAACTGATTG
AGAGGCCCGGCCAGAGCCAGAGCCAAGGCCAGAGTGAGAGTCAAAGCCAG
ATAGAATGCGAGGGTGAGAAGGAGTGCCCTTATTACATGCGTAGTGGTTC
CTGCCAGTATGGTGCTAATTGCAGGTTTAATCATCCTGATCCTACAGCTG
TTGGCGGGTCTGACTCTCCTTCAGGATATGGTAATGGTGGATCTGTCTCA
TCACAGGCTCCAGCACAAGCAAGTATAGGATCCTGGTCATCACCTATGGC
TTTAAATGAACCTGCGCCCTTTGTGCCAATGATGTATTCACCAACTCCAG
GGGTTCCTTCCCATAATTACGAATGGAATGGGGTATCGTCCCCCCCCCTA
TCCCACCACAAAGGAGCGTGCAGCCCGCCCCCCCGTATGTCGAAAACAAA
AACCCCTGGGTGGAGAATGGCCCGATAATTCCTTCACCCGCAAAGGCTAG
TTGAGGGGCTCCCCGAACGACCGGGGCCCGGCCGGATGGCGGGTACTTCC
TAGGAACGGGAGACCGGTAGTTCAAACTCCAATTGGCAAATTCCCTCCTT
CCCAAAAAATCGGAACCCCCACATTTCCCCCCTATGGCCCCTCCACCCGC
ACAAGGGGTGTGGCCCCCGGGGGGCCGTGGGTACAAAGTGTCTGTTCCTT
TTTTTAACCCGGCTCTGGGGGATTTTTGCGACTTATTGGGGCGCGGCCCT
TTCTATACAGTTACCACCTCCCTAAACCCTCACTCCCGACGCTTGCTCCT
CCGCGGCCAGAGGGGCCCTCCCCCGCCCCCCG
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