DY259947

Overview
NameDY259947
Unique NameDY259947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nephroselmis olivacea GN=ndhF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = -3 
Query:    3 FPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 326
            F   T +LRR+   ++I  +++  + S+ +   Q+   +  + +  W +T     E GY++DPLTS M            IYSD YM  D+GY+RFF Y+S F  SML
Sbjct:   29 FRETTSDLRRLHGALAIGAMALSFVVSLGVLWNQLHGIAPVRWIIEWMLTDTFRLEIGYWVDPLTSTMLVVVTSVALLVMIYSDEYMHVDEGYVRFFVYLSIFTTSML 136
The following BLAST results are available for this feature:
BLAST of DY259947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NU5C_NEPOL2.478e-1234.26NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YL19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259947 ID=DY259947; Name=DY259947; organism=Citrus clementina; type=EST; length=595bp
CCTAACATTGAAGCATTGAAAAAACTCATATAAGCAAAAAATCTCAAATA
TCCTTGATCATGAGACATATAATTGTCACTATAAATAAGAACCAGAATTC
CAACTGTAGTGATTAATATTGACATAATAGAAGTAAGTGGATCAATAAAG
TATCCGAACTCGAAAGACAAATCACTAGTGATGGTCCAACTCCTTAGGGA
TTGATAGATCGAAGTTCTATCTATTTGCTCAATAGATAGATCGATCGAAA
AAATCATAACTATACTTAACAATAAAATACTAATAAAAGCCCACATACGG
CGAAGATTTTTTGTTGCGGTCGGAAAAAATAGAAGTCCCACCCCTATTAA
CATAGGGACTGGAAGTGGAACTAAAGGTATGATCCAGGAATATTGATATG
TATGTTCCATAAAATCAATAAAGTAATAATAATTGTTTTTTATTCTTAAT
TCAGTGTTTCTGATTCACCGGTTCTTATCTCTTTTAAATTTAAAAGGGAT
TAATAAAAAAATTAAGGTTAAGGTATTAAAATGAAAAACTTAAATAAAAT
TCGCTTTTTCTATTCATAGTTATTTTGAATCTTTCCCACCAACTT
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