DY259947

Overview
NameDY259947
Unique NameDY259947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Triticum aestivum GN=ndhF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 79/136 (58.09%), Postives = 92/136 (67.65%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                 +  PTATKNLRR+WAF S+LLLSI M+FS+ LSI+QI+ +SIYQ L SWT+ +D S EFGY IDPLTSIM            IYSD YMSHD+GYLRFF Y+SFFN SML
Sbjct:    1 MEHTYQYAWVIPLLPLPVIMSMGFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVQLSIQQINGSSIYQYLWSWTVNNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYISFFNTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_SORBI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Sorghum bicolor GN=ndhF PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                    PTATKNLRR+WAF SILLLSI M+FS+ LSI+QI+ +SIYQ L SWTI +D S EFGY +DPLTSIM            IYSD+YMSHD+GYLRFF Y+SFFN SML
Sbjct:    1 MEHTYQYAWVIPLLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_SACOF (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Saccharum officinarum GN=ndhF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                    PTATKNLRR+WAF SILLLSI M+FS+ LSI+QI+ +SIYQ L SWTI +D S EFGY +DPLTSIM            IYSD+YMSHD+GYLRFF Y+SFFN SML
Sbjct:    1 MEHTYQYAWVIPLLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_SACHY (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Saccharum hybrid GN=ndhF PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                    PTATKNLRR+WAF SILLLSI M+FS+ LSI+QI+ +SIYQ L SWTI +D S EFGY +DPLTSIM            IYSD+YMSHD+GYLRFF Y+SFFN SML
Sbjct:    1 MEHTYQYAWVIPLLPLPVIMLMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Zea mays GN=ndhF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                    PTATKNLRR+WAF SILLLSI M+FS+ LSI+QI+ +SIYQ L SWTI +D S EFGY +DPLTSIM            IYSD+YMSHD+GYLRFF Y+SFFN SML
Sbjct:    1 MEHTYQYAWVIPLLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_HORVU (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Hordeum vulgare GN=ndhF PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 79/136 (58.09%), Postives = 92/136 (67.65%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                 +  PTATKNLRR+WAF S+LLLSI M+FS+ LSI+QI+ +SIYQ L SWT+ +D S EFGY IDPLTSIM            IYSD YMSHD+GYLRFF Y+SFFN SML
Sbjct:    1 MEHTYQYAWVIPLLPLPVIMSMGFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVQLSIQQINGSSIYQYLWSWTVNNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYISFFNTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_DRANE (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Draba nemorosa GN=ndhF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 81/136 (59.56%), Postives = 93/136 (68.38%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQYSW                 L FPT TK+LRRMW F+SI LLSIVMIFS+ LSI+QI  + I+Q++ SWTI ++ SFEFGYFIDPLTSIM            IYSDNYM+HDQGYLRFFAY+ FF  SML
Sbjct:    1 MEHTYQYSWIIPFIPLPVPILLGIGLLLFPTVTKSLRRMWTFLSIFLLSIVMIFSVYLSIQQIFLSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMLILITTVGILVLIYSDNYMAHDQGYLRFFAYLGFFTTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_ATRJA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Atractylodes japonica GN=ndhF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 82/136 (60.29%), Postives = 94/136 (69.12%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            ME TYQY+W                 L FPTATK+LRRMWAF S+LLLSIVMIFS++LSI+QI+ +S+YQ + SW I +D S EFGY IDPLTSIM            IYSDNYMSHD GYLRFFAYMSFF+ SML
Sbjct:    1 MEQTYQYAWIIPFLPLPVPMLIGLGLLLFPTATKSLRRMWAFQSVLLLSIVMIFSMNLSIQQINSSSVYQYVWSWIINNDFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDHGYLRFFAYMSFFSTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_ACOCL (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Acorus calamus GN=ndhF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 82/136 (60.29%), Postives = 91/136 (66.91%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                 L  PTATKNLRR+WAF S+LLLSI M+FS DL+I+QI+ + IYQ   SWTI +  S EFGY IDPLTSIM            IYSDNYMSHDQGYLRFFAYMSFFN SML
Sbjct:    1 MEHTYQYAWIIPFLPFPVTISIGLGLLLVPTATKNLRRIWAFFSVLLLSIAMVFSADLAIQQINGSFIYQYSWSWTINNTFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFNTSML 136
[Close]
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_ACOAM (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Acorus americanus GN=ndhF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 82/136 (60.29%), Postives = 91/136 (66.91%), Query Frame = -3 
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                 L  PTATKNLRR+WAF S+LLLSI M+FS DL+I+QI+ + IYQ   SWTI +  S EFGY IDPLTSIM            IYSDNYMSHDQGYLRFFAYMSFFN SML
Sbjct:    1 MEHTYQYAWIIPFLPFPVTISIGLGLLLVPTATKNLRRIWAFFSVLLLSIAMVFSADLAIQQINGSFIYQYSWSWTINNTFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFNTSML 136
The following BLAST results are available for this feature:
BLAST of DY259947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NU5C_WHEAT2.013e-3858.09NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_SORBI2.013e-3858.82NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_SACOF2.013e-3858.82NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_SACHY2.013e-3858.82NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_MAIZE2.013e-3858.82NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_HORVU2.013e-3858.09NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_DRANE2.013e-3859.56NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_ATRJA2.013e-3860.29NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_ACOCL2.013e-3860.29NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_ACOAM2.013e-3860.29NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YL19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259947 ID=DY259947; Name=DY259947; organism=Citrus clementina; type=EST; length=595bp
CCTAACATTGAAGCATTGAAAAAACTCATATAAGCAAAAAATCTCAAATA
TCCTTGATCATGAGACATATAATTGTCACTATAAATAAGAACCAGAATTC
CAACTGTAGTGATTAATATTGACATAATAGAAGTAAGTGGATCAATAAAG
TATCCGAACTCGAAAGACAAATCACTAGTGATGGTCCAACTCCTTAGGGA
TTGATAGATCGAAGTTCTATCTATTTGCTCAATAGATAGATCGATCGAAA
AAATCATAACTATACTTAACAATAAAATACTAATAAAAGCCCACATACGG
CGAAGATTTTTTGTTGCGGTCGGAAAAAATAGAAGTCCCACCCCTATTAA
CATAGGGACTGGAAGTGGAACTAAAGGTATGATCCAGGAATATTGATATG
TATGTTCCATAAAATCAATAAAGTAATAATAATTGTTTTTTATTCTTAAT
TCAGTGTTTCTGATTCACCGGTTCTTATCTCTTTTAAATTTAAAAGGGAT
TAATAAAAAAATTAAGGTTAAGGTATTAAAATGAAAAACTTAAATAAAAT
TCGCTTTTTCTATTCATAGTTATTTTGAATCTTTCCCACCAACTT
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