DY259947

Overview
NameDY259947
Unique NameDY259947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_ATRBE (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Atropa belladonna GN=ndhF PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.991e-38
Identity = 80/136 (58.82%), Postives = 93/136 (68.38%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            ME TY+Y+W                 + FPTATK+ RRMWAF S+LLLSIVMIFSI LSI+QI+ +S YQ + SW I +D S +FGY IDPLTSIMS           IYSDNYM+HDQGYLRFFAYMSFF+ SML
Sbjct:    1 MEQTYEYAWIIPFIPLPVPMLIGAGLILFPTATKSFRRMWAFQSVLLLSIVMIFSIYLSIQQINSSSFYQYVWSWIINNDFSLDFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nicotiana tabacum GN=ndhF PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37
Identity = 79/136 (58.09%), Postives = 92/136 (67.65%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            ME TY+Y+W                   FPTATK+ RRMWAF S+LLLSIVM+FSI LSI+QI+ +S YQ + SW I +D S +FGY IDPLTSIMS           IYSDNYM+HDQGYLRFFAYMSFF+ SML
Sbjct:    1 MEQTYEYAWIIPFIPLPVPMLIGAGLFLFPTATKSFRRMWAFQSVLLLSIVMVFSIYLSIQQINSSSFYQYVWSWIINNDFSLDFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_RANMC (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Ranunculus macranthus GN=ndhF PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37
Identity = 81/136 (59.56%), Postives = 91/136 (66.91%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEH YQ +W                 L FPT TK +RR+WAF S+LLLSI+MIFS+ LSI+QID   IYQ + SWTI +D S +FG FIDPLTSIM            IYSDNYMSHDQGYLRFFAYMSFFNASML
Sbjct:    1 MEHIYQDAWIIPFIPLPIPIAIGLGLLLFPTTTKRIRRIWAFFSVLLLSIIMIFSVILSIKQIDGNPIYQYVWSWTINNDFSLDFGNFIDPLTSIMLILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFNASML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_POPTR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Populus trichocarpa GN=ndhF PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37
Identity = 79/136 (58.09%), Postives = 91/136 (66.91%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY W                 L FP +TK L R+WAF S+LLLSIVM+FSIDL I+QI+ +SIYQ + SWTI +D S EFGY IDPLTSI+            +YSD+YMSHDQGYLRFF YMSFFN SML
Sbjct:    1 MEHTYQYLWIISFVTLPVPMLIGMGLLLFPVSTKKLHRIWAFPSVLLLSIVMVFSIDLFIQQINSSSIYQYVWSWTINNDFSLEFGYLIDPLTSILLILITTVGILVLVYSDSYMSHDQGYLRFFVYMSFFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_NICSY (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nicotiana sylvestris GN=ndhF PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37
Identity = 79/136 (58.09%), Postives = 92/136 (67.65%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            ME TY+Y+W                   FPTATK+ RRMWAF S+LLLSIVM+FSI LSI+QI+ +S YQ + SW I +D S +FGY IDPLTSIMS           IYSDNYM+HDQGYLRFFAYMSFF+ SML
Sbjct:    1 MEQTYEYAWIIPFIPLPVPMLIGAGLFLFPTATKSFRRMWAFQSVLLLSIVMVFSIYLSIQQINSSSFYQYVWSWIINNDFSLDFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_DRIGR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Drimys granadensis GN=ndhF PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37
Identity = 82/136 (60.29%), Postives = 91/136 (66.91%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            M+  YQY+W                 L  PTATKNLRRMWAF S+ LLSIVM+FS DLS++QID +SIYQ L SWTI +D S EFG+ IDPLTSIMS           IYSD YMSHDQGYLRFFAYMSF N SML
Sbjct:    1 MQPIYQYAWIIPFVPLPVTMSIGLGLLLVPTATKNLRRMWAFPSVSLLSIVMVFSADLSVQQIDGSSIYQYLWSWTINNDFSLEFGHLIDPLTSIMSILITTVGIMVLIYSDKYMSHDQGYLRFFAYMSFSNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_LACSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lactuca sativa GN=ndhF PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.226e-37
Identity = 80/136 (58.82%), Postives = 93/136 (68.38%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            ME TYQY+W                 L FPTATK+LRRMW+F S+LLLSIVMIFS++LSI+QI+ + +YQ + SW I +D S EFGY IDPLTSIM            IYSDNYMSHD GYLRFFAYMSFF+ SML
Sbjct:    1 MEQTYQYAWIIPFLPLPVPMLIGLGLLLFPTATKSLRRMWSFQSVLLLSIVMIFSMNLSIQQINSSYVYQYVWSWIINNDFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDHGYLRFFAYMSFFSTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_AMBTC (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Amborella trichopoda GN=ndhF PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.226e-37
Identity = 82/136 (60.29%), Postives = 92/136 (67.65%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            ME TYQY+W                 L  P ATK++RR+WAF S+LLLSIVM+FS +LSI+QI+  SIYQ L SWTI SD S EFGY ID LTSIMS           IYSDNYMSHD+GYLRFFAYMSFFN SML
Sbjct:    1 MERTYQYAWIIPFLTLAVPILIGLGLLLVPPATKSIRRIWAFPSVLLLSIVMVFSTNLSIQQINGNSIYQYLWSWTINSDSSLEFGYLIDSLTSIMSILIATVGMMVLIYSDNYMSHDKGYLRFFAYMSFFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_BRADI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Brachypodium distachyon GN=ndhF PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.797e-37
Identity = 78/136 (57.35%), Postives = 89/136 (65.44%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                    P ATKN RR+WAF S+LLLSI M+FS+ LSI+QI+ +SIYQ L SWTI +D S EFGY IDPLTSIM            IYSD YMSHD+GYLRFF Y+SFFN SML
Sbjct:    1 MEHTYQYAWVIPLLPLPVILSMGFGLFLIPIATKNFRRIWAFPSVLLLSIAMVFSVQLSIQQINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLMLITTVGILVLIYSDGYMSHDEGYLRFFIYISFFNISML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_OENPA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera parviflora GN=ndhF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.959e-37
Identity = 79/136 (58.09%), Postives = 92/136 (67.65%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            ME+TYQYSW                 L FPTATKN RR+W+F SILLLS+VM+ S+ LSI+QI+R+ IYQ + SWTI +D S EFG+ IDPL SIM             YSDNYMSHDQGYLRFFAY+SFFN SML
Sbjct:    1 MEYTYQYSWIIPFIPLPVPILIGMGLLLFPTATKNHRRVWSFPSILLLSMVMLLSVYLSIQQINRSFIYQYVWSWTINNDFSLEFGHLIDPLASIMLILITTVGILVLFYSDNYMSHDQGYLRFFAYLSFFNTSML 136          
The following BLAST results are available for this feature:
BLAST of DY259947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NU5C_ATRBE9.991e-3858.82NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_TOBAC1.305e-3758.09NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_RANMC1.305e-3759.56NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_POPTR1.305e-3758.09NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_NICSY1.305e-3758.09NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_DRIGR1.305e-3760.29NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_LACSA2.226e-3758.82NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_AMBTC2.226e-3760.29NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_BRADI3.797e-3757.35NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_OENPA4.959e-3758.09NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YL19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259947 ID=DY259947; Name=DY259947; organism=Citrus clementina; type=EST; length=595bp
CCTAACATTGAAGCATTGAAAAAACTCATATAAGCAAAAAATCTCAAATA
TCCTTGATCATGAGACATATAATTGTCACTATAAATAAGAACCAGAATTC
CAACTGTAGTGATTAATATTGACATAATAGAAGTAAGTGGATCAATAAAG
TATCCGAACTCGAAAGACAAATCACTAGTGATGGTCCAACTCCTTAGGGA
TTGATAGATCGAAGTTCTATCTATTTGCTCAATAGATAGATCGATCGAAA
AAATCATAACTATACTTAACAATAAAATACTAATAAAAGCCCACATACGG
CGAAGATTTTTTGTTGCGGTCGGAAAAAATAGAAGTCCCACCCCTATTAA
CATAGGGACTGGAAGTGGAACTAAAGGTATGATCCAGGAATATTGATATG
TATGTTCCATAAAATCAATAAAGTAATAATAATTGTTTTTTATTCTTAAT
TCAGTGTTTCTGATTCACCGGTTCTTATCTCTTTTAAATTTAAAAGGGAT
TAATAAAAAAATTAAGGTTAAGGTATTAAAATGAAAAACTTAAATAAAAT
TCGCTTTTTCTATTCATAGTTATTTTGAATCTTTCCCACCAACTT
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