DY259953

Overview
NameDY259953
Unique NameDY259953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length977
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: QOR_LAMGU (Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.069e-25
Identity = 79/219 (36.07%), Postives = 118/219 (53.88%), Query Frame = 1
Query:   31 MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY-PGLECSGTILSVGKNVSRWKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCL 678
            M+AI +++ G PEVL+LQ +V  P  ++ +VLIKV+A  +N  DT  R G+Y   K   PY PGL+ +G I +VG+ VS +K GD+V       GGYAE        V  +P  +  +  AA      T +  +  ++    GES LVHG S G+G  A Q+ +    +V  TAG EE   V    GA     ++ +  + ++K+  G KG+DVI++ L
Sbjct:    8 MRAIRVSEFGGPEVLKLQSDVAVPIPEEHQVLIKVQACGVNPVDTYIRSGTYSR-KPRLPYTPGLDVAGLIEAVGERVSAFKKGDRVFTTSTVSGGYAEYALAADHTVYKLPGELDFQKGAAIGVPYFTAYRALLHSACAKAGESVLVHGASGGVGLAACQIARACCFKVLGTAGTEEGQRVVLQNGAHEVFNHREDINIDKIKKSVGEKGIDVIIEML 225          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: QOR_SALTY (Quinone oxidoreductase OS=Salmonella typhimurium GN=qor PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.288e-24
Identity = 73/209 (34.93%), Postives = 103/209 (49.28%), Query Frame = 1
Query:   58 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLG 681
            G PEVLQ  E    +  + E+ ++ +A  +N  DT  R G YPPP   +   G E +G +  VG  V   +VGD+V  A    G Y+    V A +   +P  +S + AAA      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T G+ +K     D GA   I Y+ E  V R+KE TGGK V V+ D +G
Sbjct:   11 GGPEVLQTVEFTPAEPAEHEIQVENKAIGINFIDTYIRSGLYPPPSLPAGL-GTEAAGVVSKVGNGVEHIRVGDRVVYAQSTLGAYSSVHNVTADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRALDAGAWQVINYREESIVERVKEITGGKKVRVVYDSVG 218          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: VAT1L_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog-like OS=Mus musculus GN=Vat1l PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.902e-24
Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 1
Query:   31 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM-GKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCL 678
            M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAFP    T ++ +F  ++L  G S LVH    G+G    Q+      V VF TA   +  A+ KD  +   +  +  D+V  +K     +GVD++LDCL
Sbjct:   40 MRAVVLAGFGGLNKLRLSRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYTMLFEIANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAI-KD--SVTHLFDRNADYVQEVK-RISAEGVDIVLDCL 252          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: QOR_YEAST (Probable quinone oxidoreductase OS=Saccharomyces cerevisiae GN=ZTA1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.656e-24
Identity = 70/226 (30.97%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   34 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP-GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS---HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLGTSHFQ 696
            K I+I + G  +V++ ++   P I ++E+LIK + T +N  ++  RKG YP  K   PY  G E SGT+++ GK V+ ++VGDQV A +    +A+   + + G V+ +P G S ++   +      V + +  T+   H+  G+  L+   + G+G    Q+ K +G      A  +EKL + K+ GA+  I    ED + ++ + T GKGVD   D +G   F+
Sbjct:   10 KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK---PYVLGREASGTVVAKGKGVTNFEVGDQV-AYISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFE 231          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: VAT1L_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog-like OS=Homo sapiens GN=VAT1L PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.483e-23
Identity = 71/217 (32.72%), Postives = 112/217 (51.61%), Query Frame = 1
Query:   31 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM-GKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCL 678
            M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAFP    T +  +F  ++L  G S LVH    G+G    Q+      V VF TA   +  A+ KD  +   +  +  D+V  +K     +GVD++LDCL
Sbjct:   42 MRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAI-KD--SVTHLFDRNADYVQEVK-RISAEGVDIVLDCL 254          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: QOR_PSEAE (Quinone oxidoreductase OS=Pseudomonas aeruginosa GN=qor PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.303e-23
Identity = 72/217 (33.18%), Postives = 106/217 (48.85%), Query Frame = 1
Query:   34 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLG 681
            K I     G PEVL+ ++ +  +    EV ++  A  LN  DT  R G YP P G     G E +G + +VG  V+R+KVGD+V    G  G Y+E   +   +++ +P G+  + AAA      T    +  T  L  GE+ L H  + G+G FA Q  K  GV++  T  + EK  + +  GA   I Y  E+   R+ E T GK   V+ D +G
Sbjct:    3 KRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPAP-GLPSGLGSEGAGEVEAVGSEVTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVG 218          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: VAT1_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog OS=Mus musculus GN=Vat1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.255e-22
Identity = 75/230 (32.61%), Postives = 120/230 (52.17%), Query Frame = 1
Query:    7 STLESEGTMKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLGTS 687
            S   S   ++ +V+T  G  + ++LQ      P     ++ ++V A  LN AD + R+G Y         PG+E +G +++VG+ V   K GD+V  L   G + E+V VP+ Q   +P  ++ ++AAA      T +  +F   +L PG S LVH  + G+G  A+Q+ +  + V VF TA +  K  V K+ G    I Y T D+V  +K +   KGVD+++D LG S
Sbjct:   53 SASASAPPLRCLVLTGFGGYDKVKLQSRPAVPPAPGPGQLTLRVRACGLNFADLMGRQGLYDRLPPLPVTPGMEGAGVVVAVGEGVGDRKAGDRVMVLNRSGMWQEEVTVPSAQTFLMPEAMTFEEAAALLVNYITAYMVLFDFGNLRPGHSVLVHMAAGGVGMAALQLCRTVENVTVFGTA-SASKHEVLKENGVTHPIDYHTTDYVDEIK-KISPKGVDIVMDPLGGS 280          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: VAT1_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.255e-22
Identity = 72/222 (32.43%), Postives = 118/222 (53.15%), Query Frame = 1
Query:   31 MKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLGTS 687
            ++ +V+T  G  + ++LQ      P     ++ +++ A  LN AD + R+G Y         PG+E +G +++VG+ VS  K GD+V  L   G + E+V VP+ Q   +P  ++ ++AAA      T +  +F   +L PG S LVH  + G+G  A+Q+ +  + V VF TA +  K    K+ G    I Y T D+V  +K +   KGVD+++D LG S
Sbjct:   48 LRCLVLTGFGGYDKVKLQSRPAAPPAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTA-SASKHEALKENGVTHPIDYHTTDYVDEIK-KISPKGVDIVMDPLGGS 267          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTU (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis GN=pks2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.230e-22
Identity = 57/209 (27.27%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   46 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILD 672
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG  ++  + +++G +     ++ +F  +++ +T G+GVDV+L+
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGRGVDVVLN 1640          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTA (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pks2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.230e-22
Identity = 57/209 (27.27%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   46 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILD 672
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG  ++  + +++G +     ++ +F  +++ +T G+GVDV+L+
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGRGVDVVLN 1640          
The following BLAST results are available for this feature:
BLAST of DY259953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
QOR_LAMGU2.069e-2536.07Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE... [more]
QOR_SALTY2.288e-2434.93Quinone oxidoreductase OS=Salmonella typhimurium G... [more]
VAT1L_MOUSE3.902e-2432.72Synaptic vesicle membrane protein VAT-1 homolog-li... [more]
QOR_YEAST6.656e-2430.97Probable quinone oxidoreductase OS=Saccharomyces c... [more]
VAT1L_HUMAN1.483e-2332.72Synaptic vesicle membrane protein VAT-1 homolog-li... [more]
QOR_PSEAE3.303e-2333.18Quinone oxidoreductase OS=Pseudomonas aeruginosa G... [more]
VAT1_MOUSE1.255e-2232.61Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
VAT1_HUMAN1.255e-2232.43Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
PHAS_MYCTU6.230e-2227.27Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCTA6.230e-2227.27Phthioceranic/hydroxyphthioceranic acid synthase O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259953 ID=DY259953; Name=DY259953; organism=Citrus clementina; type=EST; length=977bp
TTTAATTCTACTCTGGAAAGTGAAGGCACAATGAAGGCAATAGTGATAAC
TCAACCCGGTAGCCCAGAAGTGCTGCAGTTGCAAGAAGTAGAAGACCCTC
AAATCAAAGACGACGAAGTGTTGATCAAAGTCGAAGCTACTGCCCTGAAC
CGGGCCGACACTCTTCAACGAAAAGGCTCCTACCCTCCACCCAAAGGCGC
CAGCCCTTACCCGGGTCTCGAATGTTCCGGAACCATCCTGTCCGTTGGTA
AAAACGTCTCTAGATGGAAAGTCGGCGACCAGGTGTGTGCTCTGCTTGGT
GGAGGAGGGTATGCTGAGAAAGTGGCTGTTCCAGCTGGACAAGTTCTTCC
CGTTCCATCTGGTGTCTCACTCAAAGATGCTGCTGCGTTTCCGGAGGTGG
CTTGCACTGTTTGGTCAACGGTTTTCATGACCAGTCACCTATCCCCAGGG
GAGTCATTTCTGGTTCATGGGGGCTCTAGTGGAATTGGTACATTTGCGAT
TCAGATGGGAAAATGCCAAGGAGTGAGAGTCTTTGTTACAGCAGGAAATG
AGGAAAAGCTGGCTGTTTGCAAGGATCTTGGTGCGGATGTGTGCATCCTT
TACAAGACTGAGGATTTTGTTGCACGAATGAAGGAAGAAACTGGGGGGAA
AGGTGTTGATGTAATTTTAGATTGCCTGGGAACCTCCCACTTTCAGCGTA
ACCCTCCACAGCCCTGAACATTGATGGGAGGCTTTTCCTAATTGGACCCC
GGGTGGGACCAAAACCGAATTAAATATAACTTCCCCTGTTGCCAAACGCC
CCCTTGTGCAAGCGGTGGGTTCGCGAACCTAAAATAAAAAAAACAAAACT
TTATTTTCCTCGGGGCGGTAAAAAATGTTTGGCCCCCCACTGCCCATGGG
GAACGGGGACCCTCGCCTCCCCCTCTCTCCCCCCCTGCGGAAACCCCCCC
AACTCCCCCCCTCCCGGCGCAGAACCC
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