DY259959

Overview
NameDY259959
Unique NameDY259959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1098
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.647e-31
Identity = 67/164 (40.85%), Postives = 107/164 (65.24%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANKA 490
            +++M+GLD+AGKTT+LYKLK  ++V T+PT+GFNVE ++   ++S T+WDVGGQ  +R  W+ Y + T  L++V+DS D  R+ E+  EL  +LN+  +     LV ANKQ+ P+A+   +I ++L L   +   W ++   A +GEGL E L  L + L +++
Sbjct:   14 QVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERFQDHCWELRGCSALTGEGLPEALQSLWSLLKSRS 177          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.481e-30
Identity = 65/151 (43.05%), Postives = 98/151 (64.90%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYE 451
            +++MLGLD AGKTTILYKLK   +V T+PT+GFNVE +E   ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +  +     LV ANKQ+ P+A+   EI ++L L   +   W +++  A +G+GL E
Sbjct:   12 QVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDALPLLEIRNRLDLERFQDHCWELRACSALTGQGLQE 162          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.033e-28
Identity = 70/170 (41.18%), Postives = 105/170 (61.76%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANKAYTTK 502
            I+++GLD +GKTTIL +LK  E  +   +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  +L+  ++  R   +++ ANK D+P AM  A+IT  LGL+  R   W I STCA +G+GL + +  LS+ +     T K
Sbjct:   20 IVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRVRMELLKDELWLVLDHKDVASRGIPVVILANKMDIPGAMTCADITAALGLNLHRSGTWSIHSTCALTGDGLDKAMQQLSSEIQKYLETRK 189          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL6_CAEEL (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans GN=arl-6 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.001e-27
Identity = 67/159 (42.14%), Postives = 101/159 (63.52%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLS 469
            I+++GLD +GKTTIL +LK  E  +   +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  ++   ++  R   +++ ANK D+P AM A++IT  LGL+  R   W I STCA +G+GL + +  LS
Sbjct:   20 IVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGAMTASDITVALGLNLYRSGTWSIHSTCALTGDGLDKAMQQLS 178          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.028e-23
Identity = 50/155 (32.26%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            + ++GL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    ++++VD+ DR++V  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   23 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.342e-23
Identity = 48/155 (30.97%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            + ++GL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   23 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.342e-23
Identity = 48/155 (30.97%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            + ++GL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   23 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.342e-23
Identity = 48/155 (30.97%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            + ++GL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   23 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.342e-23
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 208
            RIL+L LD AGKTTILYKLKLGE V  +PT+GF VETVEYKN +F VWDVG   KIRPLW+H+FQNT+G
Sbjct:   19 RILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTKG 87          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.753e-23
Identity = 48/155 (30.97%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            + ++GL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   23 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
The following BLAST results are available for this feature:
BLAST of DY259959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL11_HUMAN6.647e-3140.85ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARL11_RAT1.481e-3043.05ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARL6_CAEBR4.033e-2841.18ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL6_CAEEL2.001e-2742.14ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
AR8BA_DANRE1.028e-2332.26ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8B_RAT1.342e-2330.97ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE1.342e-2330.97ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN1.342e-2330.97ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
ARL17_HUMAN1.342e-2373.91ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]
ARL8B_MACFA1.753e-2330.97ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259959 ID=DY259959; Name=DY259959; organism=Citrus clementina; type=EST; length=1098bp
GAGAATTCTCATGTTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGT
ACAAGCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTT
AATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGT
CGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACA
CCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTA
GAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGA
TGCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGA
ATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCCGCGC
CACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGA
GGGACTTGACTGGCTCTCAAACAACCTTGCAAACAAGGCATACACAACTA
AATTTTGAGTTTTGGGTTGCCCGCACCGCTGAAATACAGAGTTAACCCCA
CTCCTCAAGTGTTCTTGCCCTTTCCTTCCCGCAATACCTTCCTTGCCCCG
TTTTACTGTGTTTGTTGTTTTCCCTTGGCAACCGTTCGAAATTCTGTTTC
TCGTACCCATCCGAATCACTTCCCGAATGGTTTACCCTCCCCTCCCACAA
AAAATAAAACACAACAACTCTCCCCTTTTCCCTCCACAAAGTTCGGTCTT
CCCCCAAAGGCATCGGCCTCTCCCTCTTCTTTGCAACGCAAGTGGCCACC
ACCCGATCACAGAAAGATTCTTTCACTGCCCGTCCGCGTGATACCTCCCT
AACTGTATTCCTATATCCTTGCTGCTATCTCTTCCTCAGCCCTCTCCCGC
CCGATGTCCCTCACGCCCGCGGGTCTCCCTTTTTTCGCCTAGCCTACCTC
CCTTTTCTCTTTCTCTACCACCCCCTCCCCCCTCTCCCTCACACGCCTCC
TCCGCTCTCACGTCCTCACTCTCTCCCGCCCCGTCGTCTCCGCGCAACCC
TCTTTGTGCATATCCGGCCTCATCTCTGTCGCGTGGCAACATTATTCT
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