DY259959

Overview
NameDY259959
Unique NameDY259959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1098
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.144e-21
Identity = 57/168 (33.93%), Postives = 92/168 (54.76%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRH---WYIQSTCATSGEG------LYEGLDWLSNNLA 481
            ++M+GLD AGKT  +  ++    +   PT+GF+   ++      T++D+GG  +IR +W++Y+  + G++FVVDS+D  R+ E RD +  +L    +    +LV ANKQD   AM  A+I + L L  L   +     I+   A  G G      +  GL+WL NN+A
Sbjct:   24 LVMVGLDNAGKTATVRGIQGESPLDVAPTVGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKLVNENKCLCQIEPCSAVLGYGKKVDKSIKNGLNWLLNNIA 191          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.064e-20
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTIL------YKLKLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            IL+LGLD AGKTT L      Y L    +    PT+G NV T  V+ K I    WDVGGQ+ +R +W  Y+    G+IF+VDS+DR+R+ E    L  ++ ++E+    +L+ ANKQD  + M   +  E+ +K+  H +  R   +    A +GEG+ + ++W+
Sbjct:   20 ILILGLDNAGKTTFLETLKKEYSLAFKALEKIQPTVGQNVATIPVDSKQI-LKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDIKEVFNKIAEH-ISARDSRVLPISALTGEGVKDAIEWM 182          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.389e-20
Identity = 58/168 (34.52%), Postives = 88/168 (52.38%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRPRHWYIQSTCATSGEGLYEGLDWLS 469
            ++L LGLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LWR YF    G++++VD  D +R+ E++ EL  +L  +EL     L+  NK D P A++  E+   LGL+             +RP   ++ S     G G  EG  WL+
Sbjct:   22 KMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQTTGKGVSKPVPGIRPIEVFMCSVVLRQGYG--EGFKWLA 187          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.389e-20
Identity = 55/167 (32.93%), Postives = 91/167 (54.49%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            +L+LGLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +M+  + L    +LV ANKQD+   ++  +I          +  R    Q+  A +G+G+ EG++W+
Sbjct:   20 VLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTGKGVREGIEWM 183          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.814e-20
Identity = 58/172 (33.72%), Postives = 96/172 (55.81%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            IL+LGLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L    +LV ANKQD+   ++  +I       T K+G      R    Q+  A +G+G+ EG++W+
Sbjct:   20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.814e-20
Identity = 58/172 (33.72%), Postives = 94/172 (54.65%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            IL+LGLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +++  + L    +LV ANKQD+   ++  +I       T K+G      R    Q+  A +G+G+ EG++W+
Sbjct:   20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.814e-20
Identity = 58/172 (33.72%), Postives = 96/172 (55.81%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            IL+LGLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L    +LV ANKQD+   ++  +I       T K+G      R    Q+  A +G+G+ EG++W+
Sbjct:   20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.814e-20
Identity = 58/172 (33.72%), Postives = 94/172 (54.65%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWL 466
            IL+LGLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +++  + L    +LV ANKQD+   ++  +I       T K+G      R    Q+  A +G+G+ EG++W+
Sbjct:   20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.370e-20
Identity = 56/168 (33.33%), Postives = 87/168 (51.79%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RPRHWYIQSTCATSGEGLYEGLDWLS 469
            ++L LGLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +   +EL     L+  NK D  +A+   E+   LGL++             RP   ++ S     G G  +G  WLS
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYNTTGKDTGKLPEGQRPIEVFMVSVVMRMGYG--DGFKWLS 187          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.042e-20
Identity = 57/167 (34.13%), Postives = 88/167 (52.69%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRPRHWYIQSTCATSGEGLYEGLDWLS 469
            ++L LGLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +   E++ EL  +L  +EL     L+  NK D P+A++  ++  +LGL+            +RP   ++ S     G G  EG+ WLS
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLS 186          
The following BLAST results are available for this feature:
BLAST of DY259959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
AR13B_DANRE8.144e-2133.93ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
ARL3_YEAST1.064e-2036.36ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]
SAR1_SCHPO1.389e-2034.52Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
ARFRP_BOVIN1.389e-2032.93ADP-ribosylation factor-related protein 1 OS=Bos t... [more]
ARFRP_RAT1.814e-2033.72ADP-ribosylation factor-related protein 1 OS=Rattu... [more]
ARFRP_PONAB1.814e-2033.72ADP-ribosylation factor-related protein 1 OS=Pongo... [more]
ARFRP_MOUSE1.814e-2033.72ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
ARFRP_HUMAN1.814e-2033.72ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
SAR1_DEBHA2.370e-2033.33Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_ASPNG4.042e-2034.13Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259959 ID=DY259959; Name=DY259959; organism=Citrus clementina; type=EST; length=1098bp
GAGAATTCTCATGTTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGT
ACAAGCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTT
AATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGT
CGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACA
CCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTA
GAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGA
TGCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGA
ATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCCGCGC
CACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGA
GGGACTTGACTGGCTCTCAAACAACCTTGCAAACAAGGCATACACAACTA
AATTTTGAGTTTTGGGTTGCCCGCACCGCTGAAATACAGAGTTAACCCCA
CTCCTCAAGTGTTCTTGCCCTTTCCTTCCCGCAATACCTTCCTTGCCCCG
TTTTACTGTGTTTGTTGTTTTCCCTTGGCAACCGTTCGAAATTCTGTTTC
TCGTACCCATCCGAATCACTTCCCGAATGGTTTACCCTCCCCTCCCACAA
AAAATAAAACACAACAACTCTCCCCTTTTCCCTCCACAAAGTTCGGTCTT
CCCCCAAAGGCATCGGCCTCTCCCTCTTCTTTGCAACGCAAGTGGCCACC
ACCCGATCACAGAAAGATTCTTTCACTGCCCGTCCGCGTGATACCTCCCT
AACTGTATTCCTATATCCTTGCTGCTATCTCTTCCTCAGCCCTCTCCCGC
CCGATGTCCCTCACGCCCGCGGGTCTCCCTTTTTTCGCCTAGCCTACCTC
CCTTTTCTCTTTCTCTACCACCCCCTCCCCCCTCTCCCTCACACGCCTCC
TCCGCTCTCACGTCCTCACTCTCTCCCGCCCCGTCGTCTCCGCGCAACCC
TCTTTGTGCATATCCGGCCTCATCTCTGTCGCGTGGCAACATTATTCT
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