DY259959

Overview
NameDY259959
Unique NameDY259959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1098
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 303.523 bits (776), Expect = 1.411e-81
Identity = 149/162 (91.98%), Postives = 156/162 (96.30%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANK 487
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN L N+
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 1.411e-81
Identity = 149/162 (91.98%), Postives = 156/162 (96.30%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANK 487
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN L N+
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 1.411e-81
Identity = 149/162 (91.98%), Postives = 156/162 (96.30%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANK 487
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN L N+
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 302.368 bits (773), Expect = 3.144e-81
Identity = 148/163 (90.80%), Postives = 155/163 (95.09%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANKA 490
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RMLNEDELRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS  L N++
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 3.144e-81
Identity = 148/162 (91.36%), Postives = 155/162 (95.68%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANK 487
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN L N+
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 3.144e-81
Identity = 148/162 (91.36%), Postives = 155/162 (95.68%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANK 487
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN L N+
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 3.144e-81
Identity = 148/162 (91.36%), Postives = 155/162 (95.68%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANK 487
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN L N+
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 3.144e-81
Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLAN 484
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN L N
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 3.144e-81
Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLAN 484
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN L N
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 9.147e-81
Identity = 147/163 (90.18%), Postives = 155/163 (95.09%), Query Frame = 2 
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRPRHWYIQSTCATSGEGLYEGLDWLSNNLANKA 490
            RILM+GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN L N++
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
The following BLAST results are available for this feature:
BLAST of DY259959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF1_MACFA1.411e-8191.98ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN1.411e-8191.98ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN1.411e-8191.98ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF_DUGJA3.144e-8190.80ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF2_RAT3.144e-8191.36ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE3.144e-8191.36ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN3.144e-8191.36ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF1_LOCMI3.144e-8191.30ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME3.144e-8191.30ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF12_CAEEL9.147e-8190.18ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259959 ID=DY259959; Name=DY259959; organism=Citrus clementina; type=EST; length=1098bp
GAGAATTCTCATGTTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGT
ACAAGCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTT
AATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGT
CGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACA
CCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTA
GAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGA
TGCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGA
ATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCCGCGC
CACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGA
GGGACTTGACTGGCTCTCAAACAACCTTGCAAACAAGGCATACACAACTA
AATTTTGAGTTTTGGGTTGCCCGCACCGCTGAAATACAGAGTTAACCCCA
CTCCTCAAGTGTTCTTGCCCTTTCCTTCCCGCAATACCTTCCTTGCCCCG
TTTTACTGTGTTTGTTGTTTTCCCTTGGCAACCGTTCGAAATTCTGTTTC
TCGTACCCATCCGAATCACTTCCCGAATGGTTTACCCTCCCCTCCCACAA
AAAATAAAACACAACAACTCTCCCCTTTTCCCTCCACAAAGTTCGGTCTT
CCCCCAAAGGCATCGGCCTCTCCCTCTTCTTTGCAACGCAAGTGGCCACC
ACCCGATCACAGAAAGATTCTTTCACTGCCCGTCCGCGTGATACCTCCCT
AACTGTATTCCTATATCCTTGCTGCTATCTCTTCCTCAGCCCTCTCCCGC
CCGATGTCCCTCACGCCCGCGGGTCTCCCTTTTTTCGCCTAGCCTACCTC
CCTTTTCTCTTTCTCTACCACCCCCTCCCCCCTCTCCCTCACACGCCTCC
TCCGCTCTCACGTCCTCACTCTCTCCCGCCCCGTCGTCTCCGCGCAACCC
TCTTTGTGCATATCCGGCCTCATCTCTGTCGCGTGGCAACATTATTCT
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