DY259959

Overview
NameDY259959
Unique NameDY259959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1098
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.541e-16
Identity = 54/152 (35.53%), Postives = 83/152 (54.61%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LHSLRPRH-WYIQSTCATSGEGLYE 451
            +L+LGLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  AR EL ++L+ D   D  +++ ANKQDL  AMN  E+  +LG L S   R  + + ++ A +G G  E
Sbjct:   79 VLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP--DLPVVIVANKQDLSGAMNMVELQQELGLLASYNQREVFLLAASIAPAGSGFGE 228          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.040e-16
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAMNAAEITDKLGLH 385
            R L+LGLD +GK+TI+ KL   +       +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE R   +  ++V  NK DL        + DK  LH
Sbjct:   18 RCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.889e-16
Identity = 45/124 (36.29%), Postives = 74/124 (59.68%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 337
            ++++LG++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L++   L+ ANKQDL
Sbjct:   19 KVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.757e-15
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 391
            I+ +GLD AGK+T+L  LK     T  PT     + +   +I F  +D+GG +  R LW  Y  N+ G++F+VDS D  R  E+R  L  +L+  +L    +L+ +NK D+  A++   +    G+  L
Sbjct:   23 IVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHL 151          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.139e-14
Identity = 47/128 (36.72%), Postives = 72/128 (56.25%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 382
            +IL+LGLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFANKQDL  A +  +I + L L
Sbjct:   20 QILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALAL 145          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.911e-12
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 2
Query:    5 ILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 337
            IL LG+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ +  + A ++V  NK DL
Sbjct:   38 ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLE--KRAPVVVLMNKIDL 146          
BLAST of DY259959 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.430e-11
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 2
Query:    2 RILMLGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 283
            +IL LGLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
The following BLAST results are available for this feature:
BLAST of DY259959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL10_MOUSE3.541e-1635.53ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
CIN4_YEAST6.040e-1635.82GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARLX_DICDI7.889e-1636.29ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
SAR1_GIALA1.757e-1533.33GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
ARL9_HUMAN1.139e-1436.72ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
SAR1_ENCCU6.911e-1236.94Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
SAR1_TOBAC3.430e-1137.23GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259959 ID=DY259959; Name=DY259959; organism=Citrus clementina; type=EST; length=1098bp
GAGAATTCTCATGTTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGT
ACAAGCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTT
AATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGT
CGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACA
CCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTA
GAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGA
TGCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGA
ATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCCGCGC
CACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGA
GGGACTTGACTGGCTCTCAAACAACCTTGCAAACAAGGCATACACAACTA
AATTTTGAGTTTTGGGTTGCCCGCACCGCTGAAATACAGAGTTAACCCCA
CTCCTCAAGTGTTCTTGCCCTTTCCTTCCCGCAATACCTTCCTTGCCCCG
TTTTACTGTGTTTGTTGTTTTCCCTTGGCAACCGTTCGAAATTCTGTTTC
TCGTACCCATCCGAATCACTTCCCGAATGGTTTACCCTCCCCTCCCACAA
AAAATAAAACACAACAACTCTCCCCTTTTCCCTCCACAAAGTTCGGTCTT
CCCCCAAAGGCATCGGCCTCTCCCTCTTCTTTGCAACGCAAGTGGCCACC
ACCCGATCACAGAAAGATTCTTTCACTGCCCGTCCGCGTGATACCTCCCT
AACTGTATTCCTATATCCTTGCTGCTATCTCTTCCTCAGCCCTCTCCCGC
CCGATGTCCCTCACGCCCGCGGGTCTCCCTTTTTTCGCCTAGCCTACCTC
CCTTTTCTCTTTCTCTACCACCCCCTCCCCCCTCTCCCTCACACGCCTCC
TCCGCTCTCACGTCCTCACTCTCTCCCGCCCCGTCGTCTCCGCGCAACCC
TCTTTGTGCATATCCGGCCTCATCTCTGTCGCGTGGCAACATTATTCT
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