DY259966

Overview
NameDY259966
Unique NameDY259966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1019
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 2.110e-36
Identity = 85/200 (42.50%), Postives = 116/200 (58.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE-SDFKSEPQTIKINQPNTGASGAPAAQKSAC 712
            L K + +GDSGVGKS +LLR                  KI+T+ ++GK IKLQIWDTAGQERFR    + YRG   +++VYDVTD+ SF N+  WI+ IE++A DNV K+++GNK+DM  S++ V     Q  AD   I F ETSAK  +N+E+ F S+ K    R+ E     +   TI + +P         +QKS C
Sbjct:    8 LFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDM-ISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVKLCIDRIEEFKPSSTSSSTIILKKPQ--------SQKSNC 198          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.756e-36
Identity = 82/205 (40.00%), Postives = 119/205 (58.05%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI-----KQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L K++LIGDSGVGKS +L R                    ++++++GK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   SF+N+  W+R +  HA  ++  ++VGNK+D+    RAV   +G+ALA++ G+ F ETSA   +NVEE F +I  ++     ++ LA  +  +    +           A    K ACC
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIH-LRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAAGNTKRACC 215          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.600e-36
Identity = 79/204 (38.73%), Postives = 118/204 (57.84%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTG----ASGAPAAQKSACC 715
            L K++LIGDSGVGKS +L R                    RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ GNK+D++   RAV    G AL+++ G+ F ETSA    N+E+ F +I  +I   +++    ++  T   + P  G     +      K  CC
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCC 214          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 3.600e-36
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T     P  Q   CC
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT-TENKPKVQ---CC 213          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 3.600e-36
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T     P  Q   CC
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT-TENKPKVQ---CC 213          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 3.600e-36
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T     P  Q   CC
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT-TENKPKVQ---CC 213          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 3.600e-36
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T     P  Q   CC
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT-TENKPKVQ---CC 213          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 3.600e-36
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T     P  Q   CC
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT-TENKPKVQ---CC 213          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 3.600e-36
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T     P  Q   CC
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT-TENKPKVQ---CC 213          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.600e-36
Identity = 85/208 (40.87%), Postives = 119/208 (57.21%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T  +      K  CC
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTEN----KPKMQCC 213          
The following BLAST results are available for this feature:
BLAST of DY259966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABA_DICDI2.110e-3642.50Ras-related protein RabA OS=Dictyostelium discoide... [more]
RGP2_ORYSJ2.756e-3640.00Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11C_LOTJA3.600e-3638.73Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_RAT3.600e-3641.35Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT3.600e-3641.35Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB3.600e-3641.35Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG3.600e-3641.35Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE3.600e-3641.35Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN3.600e-3641.35Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK3.600e-3640.87Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259966 ID=DY259966; Name=DY259966; organism=Citrus clementina; type=EST; length=1019bp
CGGCGACTTGTTAATTCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAAT
TGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGT
GCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGT
GGGGAAGAGTTGTTTGCTTCTGCGATTTTCAGACGGTTCCTTCACAACCA
GTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTT
GATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACG
GTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCATGGGGATTTTGC
TGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATATTAGGAACTGG
ATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAACAAGATACTTGT
TGGGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTGCCTACTTCAA
AGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGT
GCAAAAACTAATTTGAATGTGGAGGAGGTTTTCTTTTCAATTGCCAAGGA
TATCAAGCAAAGACTTGCCGAATCAGATTTCAAATCCGAGCCTCAGACAA
TTAAAATTAACCAACCCAATACCGGAGCCAGTGGCGCCCCAGCTGCCCAA
AAGTCAGCTTGCTGTGGCGGTACCTAAACCAAATCCCAATTAGGTCGGGG
GGAAAAGATTCGGCCAAAGGCGAGCATTCCGTTGGTCAACCAATCCTTGT
TGACATTTATGAGGGAGCCTGGTATTTATCCCCCGGTCCTTTTTTCCCCA
CCCACCCCATTTCCTAACACGCCAAAGGGCACCCCTTCTCCCAGCCCATT
CCGGAAACCTAGAAAATGGACCCCCTCTTTCCCATGCCGCCGCACCCCCA
CCCCCCCCCCACCACTCCCCACGGTCCTCTAAGTAACACACACACATTCC
AACTCCTCTACCTTTCACC
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