DY259966

Overview
NameDY259966
Unique NameDY259966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1019
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259966_ssr986 microsatellite DY259966_ssr986:986..995. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15497 contig Ccv1_Contig15497:112..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.274e-49
Identity = 108/203 (53.20%), Postives = 136/203 (67.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNT-GASGAPAAQKS-ACCG 718
            L KLLLIGDS VGKSCLLLR                  KIRTIE DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD T+  SFNN++ W+  I+++A+++V K+L+GNK DM ESK  V T  G+ALADE GI F ETSAK ++NVE+ F +IA +IK+++      S+    K + P T    G P  Q +  CCG
Sbjct:    8 LFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESK-VVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMG-----SQTNANKTSGPGTVQMKGQPIQQNNGGCCG 204          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.664e-49
Identity = 105/202 (51.98%), Postives = 133/202 (65.84%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRL--AESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    +   SE   + I      +SG        CC
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSG------GGCC 202          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.664e-49
Identity = 94/163 (57.67%), Postives = 127/163 (77.91%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI 604
            L KLLLIGDSGVGK+CL++R                  +IRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+A+DI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.174e-49
Identity = 95/163 (58.28%), Postives = 127/163 (77.91%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI 604
            L KLLLIGDSGVGK+CL++R                  KIRT++++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+A+DI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 3.708e-49
Identity = 105/202 (51.98%), Postives = 132/202 (65.35%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFK--SEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+        +E   +KI       SG        CC
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG------GGCC 205          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 3.708e-49
Identity = 105/202 (51.98%), Postives = 132/202 (65.35%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFK--SEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+        +E   +KI       SG        CC
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG------GGCC 205          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 3.708e-49
Identity = 105/202 (51.98%), Postives = 132/202 (65.35%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFK--SEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+        +E   +KI       SG        CC
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG------GGCC 205          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 3.708e-49
Identity = 105/202 (51.98%), Postives = 132/202 (65.35%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFK--SEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+        +E   +KI       SG        CC
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG------GGCC 205          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 3.708e-49
Identity = 105/202 (51.98%), Postives = 132/202 (65.35%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFK--SEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+        +E   +KI       SG        CC
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG------GGCC 205          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.843e-49
Identity = 100/204 (49.02%), Postives = 137/204 (67.16%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDF----KSEPQTIKINQPNTGASGAPAAQKSACC 715
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +G+ALA E GI F E+SAK + NV E+FF++AK I++++  +        +   I IN      SG+  + KS CC
Sbjct:   20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISIN------SGSGNSSKSNCC 215          
The following BLAST results are available for this feature:
BLAST of DY259966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABD1_ARATH1.274e-4953.20Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1_DISOM1.664e-4951.98Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB13_BOVIN1.664e-4957.67Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_MOUSE2.174e-4958.28Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB1A_RAT3.708e-4951.98Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG3.708e-4951.98Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE3.708e-4951.98Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN3.708e-4951.98Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA3.708e-4951.98Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
SEC4_YEAST4.843e-4949.02Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259966 ID=DY259966; Name=DY259966; organism=Citrus clementina; type=EST; length=1019bp
CGGCGACTTGTTAATTCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAAT
TGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGT
GCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGT
GGGGAAGAGTTGTTTGCTTCTGCGATTTTCAGACGGTTCCTTCACAACCA
GTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTT
GATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACG
GTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCATGGGGATTTTGC
TGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATATTAGGAACTGG
ATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAACAAGATACTTGT
TGGGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTGCCTACTTCAA
AGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGT
GCAAAAACTAATTTGAATGTGGAGGAGGTTTTCTTTTCAATTGCCAAGGA
TATCAAGCAAAGACTTGCCGAATCAGATTTCAAATCCGAGCCTCAGACAA
TTAAAATTAACCAACCCAATACCGGAGCCAGTGGCGCCCCAGCTGCCCAA
AAGTCAGCTTGCTGTGGCGGTACCTAAACCAAATCCCAATTAGGTCGGGG
GGAAAAGATTCGGCCAAAGGCGAGCATTCCGTTGGTCAACCAATCCTTGT
TGACATTTATGAGGGAGCCTGGTATTTATCCCCCGGTCCTTTTTTCCCCA
CCCACCCCATTTCCTAACACGCCAAAGGGCACCCCTTCTCCCAGCCCATT
CCGGAAACCTAGAAAATGGACCCCCTCTTTCCCATGCCGCCGCACCCCCA
CCCCCCCCCCACCACTCCCCACGGTCCTCTAAGTAACACACACACATTCC
AACTCCTCTACCTTTCACC
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