DY259966

Overview
NameDY259966
Unique NameDY259966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1019
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259966_ssr986 microsatellite DY259966_ssr986:986..995. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15497 contig Ccv1_Contig15497:112..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 4.854e-41
Identity = 86/200 (43.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KGQ LA++ G  FFE SAK N++V + F  +   I  ++++S   ++P  +  ++    +   P  Q++  C
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS-LDTDPSMLGSSKNTRLSDTPPLLQQNCSC 219          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.854e-41
Identity = 89/200 (44.50%), Postives = 124/200 (62.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQ-PNTGASGAPAAQKSAC 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++ES   ++P      Q P      AP  Q  AC
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCAC 220          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.854e-41
Identity = 89/200 (44.50%), Postives = 124/200 (62.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQ-PNTGASGAPAAQKSAC 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++ES   ++P      Q P      AP  Q  AC
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCAC 220          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.854e-41
Identity = 89/200 (44.50%), Postives = 124/200 (62.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQ-PNTGASGAPAAQKSAC 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++ES   ++P      Q P      AP  Q  AC
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCAC 220          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 4.854e-41
Identity = 89/200 (44.50%), Postives = 124/200 (62.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQ-PNTGASGAPAAQKSAC 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++ES   ++P      Q P      AP  Q  AC
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCAC 220          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.854e-41
Identity = 93/212 (43.87%), Postives = 131/212 (61.79%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES--DFKSEPQTIKI--NQPNTGASGAPAAQK--------SACC 715
            L K ++IGD+GVGKSCLLL+                    R + +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE + + AK+I +++ +   D  +E   IKI   Q  T + G  + Q+        S CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIGPDSGCC 216          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.340e-41
Identity = 85/200 (42.50%), Postives = 125/200 (62.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KG+ LA++ G  FFE SAK N++V + F  +   I  ++++S   ++P  +  ++    +   P  Q++  C
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS-MDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.340e-41
Identity = 85/200 (42.50%), Postives = 125/200 (62.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KG+ LA++ G  FFE SAK N++V + F  +   I  ++++S   ++P  +  ++    +   P  Q++  C
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS-LDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 8.280e-41
Identity = 84/200 (42.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R +PT KG+ LA++ G  FFE SAK N++V + F  +   I  ++++S   ++P  +  ++    +   P  Q++  C
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS-MDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 8.280e-41
Identity = 88/200 (44.00%), Postives = 123/200 (61.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQ-PNTGASGAPAAQKSAC 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++ES   ++P      Q P       P  Q  AC
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC 220          
The following BLAST results are available for this feature:
BLAST of DY259966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_HUMAN4.854e-4143.00Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3A_RAT4.854e-4144.50Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG4.854e-4144.50Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE4.854e-4144.50Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_BOVIN4.854e-4144.50Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB2B_MOUSE4.854e-4143.87Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB3B_MOUSE6.340e-4142.50Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU6.340e-4142.50Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_RAT8.280e-4142.00Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3A_MACFA8.280e-4144.00Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259966 ID=DY259966; Name=DY259966; organism=Citrus clementina; type=EST; length=1019bp
CGGCGACTTGTTAATTCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAAT
TGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGT
GCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGT
GGGGAAGAGTTGTTTGCTTCTGCGATTTTCAGACGGTTCCTTCACAACCA
GTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTT
GATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACG
GTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCATGGGGATTTTGC
TGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATATTAGGAACTGG
ATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAACAAGATACTTGT
TGGGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTGCCTACTTCAA
AGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGT
GCAAAAACTAATTTGAATGTGGAGGAGGTTTTCTTTTCAATTGCCAAGGA
TATCAAGCAAAGACTTGCCGAATCAGATTTCAAATCCGAGCCTCAGACAA
TTAAAATTAACCAACCCAATACCGGAGCCAGTGGCGCCCCAGCTGCCCAA
AAGTCAGCTTGCTGTGGCGGTACCTAAACCAAATCCCAATTAGGTCGGGG
GGAAAAGATTCGGCCAAAGGCGAGCATTCCGTTGGTCAACCAATCCTTGT
TGACATTTATGAGGGAGCCTGGTATTTATCCCCCGGTCCTTTTTTCCCCA
CCCACCCCATTTCCTAACACGCCAAAGGGCACCCCTTCTCCCAGCCCATT
CCGGAAACCTAGAAAATGGACCCCCTCTTTCCCATGCCGCCGCACCCCCA
CCCCCCCCCCACCACTCCCCACGGTCCTCTAAGTAACACACACACATTCC
AACTCCTCTACCTTTCACC
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