DY259971

Overview
NameDY259971
Unique NameDY259971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1377 contig Ccv1_Contig1377:1..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 4.159e-49
Identity = 93/151 (61.59%), Postives = 112/151 (74.17%), Query Frame = 2
Query:  107 ADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAY----GEGNERRLTGRHEIADINTFSWGVS 547
            ADKA GRDIV +HY+ACLYAGI I+G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I +AI+KL KR   HI AY    G  N RRLTG HE ++IN FS GV+
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGIKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLRCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVA 317          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 195.282 bits (495), Expect = 4.159e-49
Identity = 92/151 (60.93%), Postives = 112/151 (74.17%), Query Frame = 2
Query:  107 ADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAY----GEGNERRLTGRHEIADINTFSWGVS 547
            ADKA GRDIV +HY+ACLYAG+ I+G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I +AI+KL KR   HI AY    G  N RRLTG HE ++IN FS GV+
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVA 317          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 4.159e-49
Identity = 92/151 (60.93%), Postives = 112/151 (74.17%), Query Frame = 2
Query:  107 ADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAY----GEGNERRLTGRHEIADINTFSWGVS 547
            ADKA GRDIV +HY+ACLYAG+ I+G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I +AI+KL KR   HI AY    G  N RRLTG HE ++IN FS GV+
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVA 317          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 7.095e-49
Identity = 93/148 (62.84%), Postives = 108/148 (72.97%), Query Frame = 2
Query:  107 ADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDG-GIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            A K   RD + +HY+ACLYAGI ISGIN EVMP QWEFQVGPC GI  GD LWMAR++L RI E  G+  S  PKP+KGDWNGAG H+NYSTK MR  G G+  I  AI+KL K+  EHIA YGE N+ RLTG+HE A + TFS GV+
Sbjct:  165 AGKVFARDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGPCTGIEMGDHLWMARFLLLRIGEEWGITPSLHPKPLKGDWNGAGCHSNYSTKDMRTPGKGMAAIEDAIKKLEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVA 312          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.210e-48
Identity = 88/145 (60.69%), Postives = 109/145 (75.17%), Query Frame = 2
Query:  113 KALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            K   RD++ +HY+ACL+AG++ISGIN EVMP QWEFQVGPC GI  GD+LW+ARY+L+R+ E  GV +SF PKP+KG+WNGAG H N STKSMR  GG+  I  A+ KL KR  EH+  YG  N++RLTGRHE A I  FS GV+
Sbjct:  165 KVYARDLIEAHYRACLHAGVDISGINAEVMPSQWEFQVGPCEGIQMGDELWIARYLLQRVAEEFGVKVSFHPKPLKGEWNGAGCHTNVSTKSMRLPGGMKSIEVALSKLAKRHKEHMLLYGADNDQRLTGRHETASIEGFSSGVA 309          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.521e-48
Identity = 97/182 (53.30%), Postives = 118/182 (64.84%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            +E  YTLL  D N P                      K + RDIV +HYKACLYAGI ISG N EVMP QWE+QVGPC GI+ GDQLW++R+ L R+ E  G  +S  PKPI GDWNG G H+N+STK+MR +GG+ VI +A++KL     E IA YGE NE RLTGRHE   I++FSWGV+
Sbjct:  130 LEQEYTLLGSD-NRPYGWPAGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCTGIAMGDQLWISRFFLHRVAEEFGAKVSLHPKPIAGDWNG-GLHSNFSTKAMREEGGMKVIEEALKKLEPHHVECIAEYGEDNELRLTGRHETGSIDSFSWGVA 309          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 3.893e-47
Identity = 99/186 (53.23%), Postives = 119/186 (63.98%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAY----GEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLL  D   P                    AD+   RD+V +H  ACLYAGI+ +G N EVMP QWEFQ+GP  GI + D LW++RYIL+RI E  GVV++FDPKP++G WNGAGAH N+STK MR DGGI  I +AIEKL KR   HI AY    G+ NERRL GR E + I+ FSWGV+
Sbjct:  170 IEQEYTLLDVD-GRPFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPA-GIKACDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRADGGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSWGVA 353          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.296e-46
Identity = 97/186 (52.15%), Postives = 120/186 (64.52%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAY----GEGNERRLTGRHEIADINTFSWGVS 547
            +E  YTLL  D + PL                   A++  GRD+V +HY+ACL AGINISG N +VMP QWEFQVGPC GI+ GD LWMARY+L R+ E   VV++ DPKPI GDWNGAG H N+ST++MR   GI  I  AI+KL K   +HI AY    G+ NERRLTG +E + I+ FS GV+
Sbjct:  130 MEQEYTLLDIDKH-PLGWPKNGYPGPQGPYYCGVGANRVYGRDVVEAHYRACLCAGINISGENAKVMPAQWEFQVGPCEGITMGDDLWMARYLLHRVAEDFDVVVTLDPKPIPGDWNGAGMHTNFSTEAMRGPNGILEIESAIDKLSKVHEKHIKAYDPHAGKDNERRLTGHYETSSIHDFSAGVA 314          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 176.407 bits (446), Expect = 1.999e-43
Identity = 85/151 (56.29%), Postives = 107/151 (70.86%), Query Frame = 2
Query:  107 ADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAY----GEGNERRLTGRHEIADINTFSWGVS 547
            ADKA  RDI+ +HY+ACLYAG+ I+G   EV   QWEFQ+GPC GI  GD LW+AR+IL R+ +  GV+ +FD KPI G+WNGAG H N+STK+MR + G+  I +AIEKL KR   HI AY    G  N RRLTG H+ ++IN FS GV+
Sbjct:  167 ADKAYRRDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGPCEGIRMGDHLWVARFILHRVCKDFGVIATFDSKPIPGNWNGAGCHTNFSTKTMREENGLKHIKEAIEKLSKRHRYHIRAYDPKGGLDNARRLTGFHKTSNINDFSAGVA 317          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.999e-43
Identity = 86/153 (56.21%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  107 ADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKP--IKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAY----GEGNERRLTGRHEIADINTFSWGVS 547
            AD+A GR++V +HY+ACL+AG+NI G N EV PGQWEFQ+G C GI  GDQLWM+RYIL R+ E  GV +S DPKP    GDWNGAG H N+ST  MR  GGI  I  A+  L +   E +  Y    GE N RRLTGRHE +  + FSWGV+
Sbjct:  171 ADRAFGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKFSWGVA 323          
The following BLAST results are available for this feature:
BLAST of DY259971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_RAT4.159e-4961.59Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_MOUSE4.159e-4960.93Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_ACOCA4.159e-4960.93Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_CRYNE7.095e-4962.84Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_DEBHA1.210e-4860.69Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_GIBFU3.521e-4853.30Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA1_DROME3.893e-4753.23Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_PANAR3.296e-4652.15Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA_CRIGR1.999e-4356.29Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA_CAEEL1.999e-4356.21Probable glutamine synthetase OS=Caenorhabditis el... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YM23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259971 ID=DY259971; Name=DY259971; organism=Citrus clementina; type=EST; length=920bp
CATTGAGCCCCTCTACACTCTTCTTCAAAAAGACATAAACTGGCCCTTGG
GGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTGCGGT
GTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGTGAATTCTCACTACAA
AGCTTGCCTTTACGCTGGAATTAACATCAGTGGCATTAACGGTGAAGTTA
TGCCGGGTCAGTGGGAATTCCAAGTGGGTCCCTGTGTGGGTATCTCTTCT
GGTGATCAGTTATGGATGGCTCGGTACATACTCGAGAGGATTACTGAAAT
TGCCGGAGTTGTTCTTTCATTTGATCCAAAACCAATCAAGGGTGACTGGA
ATGGTGCTGGTGCACACGCCAACTACAGCACCAAGTCTATGAGGAATGAT
GGTGGAATTGATGTGATCAACAAGGCAATTGAAAAGTTGGGGAAACGCCC
CGGGGAACACATTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACTG
GTCGACATGAAATTGCAGATATCAACACTTTCTCTTGGGGTGTTTCCTAA
TAAAGGTGCCTCCATTCACGTTTGGCCTTGACACCGCCAAAGATGGAAAA
GGAATACTCTTTAAGAACAACGGCCCCCCTTATACACAAACCCATTTGCT
GTGAATTTCTATAATCCTTAACACCTTCTTACTGCGGTACCCATTACATA
AAACGGTGATCTGTTACAAAGATACAAAAACACAGTAAATGGTAACTCTC
TATATCACCCCACTCACTAACAGATCCCACGTCTCCAACTATAACCGAAT
CCTTACGCAAATGCTACAATTAAATTCACTACGTTTAATTTTATATCTCC
TATCTTATCACTATTACCTAACTTACCCCTCCTCGTCCTCCAATCCCCAA
ACCTATTTACCCCTTCCCGG
back to top