DY259973

Overview
NameDY259973
Unique NameDY259973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig768 contig Ccv1_Contig768:588..1212. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 1.234e-14
Identity = 26/81 (32.10%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   75 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFV 314
            ++ +FK     E+R  +   IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + + ++R+R++L   +A F+ V
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLV 83          

HSP 2 Score: 41.2022 bits (95), Expect = 1.234e-14
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 1
Query:  346 MSAIYEENRDEDGFLYMTYSGENTFGIF*SV 438
            +S +YE  +DEDGFLYM Y+ + TFG+  SV
Sbjct:   95 ISEVYESEKDEDGFLYMVYASQETFGMKLSV 125          
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.624e-14
Identity = 28/77 (36.36%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFV 314
            FK       R  E  +IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + V ++R+R++L P +A F+ V
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLV 83          

HSP 2 Score: 40.0466 bits (92), Expect = 1.624e-14
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  355 IYEENRDEDGFLYMTYSGENTFG 423
            IYE+ +DEDGFLYM Y+ + TFG
Sbjct:   98 IYEQEKDEDGFLYMVYASQETFG 120          
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.306e-13
Identity = 26/81 (32.10%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   75 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFV 314
            ++ +FK     E+R  +   IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + + ++R+R++L   +A F+ V
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLV 83          

HSP 2 Score: 37.7354 bits (86), Expect = 1.306e-13
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 1
Query:  346 MSAIYEENRDEDGFLYMTYSGENTFGIF*SV 438
            +S +YE  +DEDGFLYM  + + TFG+  SV
Sbjct:   95 ISEVYESEKDEDGFLYMVCASQETFGMKLSV 125          
The following BLAST results are available for this feature:
BLAST of DY259973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3B_HUMAN1.234e-1432.10Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN1.624e-1436.36Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN1.306e-1332.10Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259973 ID=DY259973; Name=DY259973; organism=Citrus clementina; type=EST; length=629bp
CTTGCCTGCTTTTGTTGCTTATCAATTTTGCGATCTCAGCTACATTTCTC
TCTGAAACGGAAAGCACGCTCATGGCGAAAAATTCTTTTAAGCTAGAACA
CCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGACAAGTATC
CAGACAGAATCCCAGTGATTGTGGAGAGGGCCGAAAAAAGTGATGTACCT
GAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGCCA
GTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCACTCCTGAGAAGGCTA
TTTTCATTTTTGTGAAAAACATTCTGCCCACCCACTGCGGCAATGATGTC
TGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACCT
ACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACTA
TTATGTGAATAATGCTTCACGAAGTTAGGTGAAGAAGGGGTTAAGTTGTA
AATAGTTCTAAGTTCCATTACTTTGGAATTTTCTTTTAGTTAAGGGTATT
AAATGTAACAACCCTAAAAAATTGGGATCCACAAACTATTTACATAAAAT
TCCAACAGTTTTCTCTATGCCCTCGCTTG
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