DY259974

Overview
NameDY259974
Unique NameDY259974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length926
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: MFRN1_RAT (Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.575e-32
Identity = 72/188 (38.30%), Postives = 113/188 (60.11%), Query Frame = 2
Query:   95 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVP---NNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL---MEFDPNS 640
            M +G++AG +EH  MYPVD++KTRMQ +          +  A   ++  EG     RG+  M +GAGPAHA+YF+ YE  K   +       N+ +A+ ++G  +T+  DAV+ P ++VKQRLQ+ +S ++    C++ V   EG+GAFY SY T + MN PFQ++HF TYE ++  +    +++P S
Sbjct:   49 MTAGAMAGILEHSIMYPVDSVKTRMQSLNPDPKARYTSIYGALKRIMHTEGFWRPLRGLNVMMMGAGPAHAMYFACYENMKRTLNDVFSHQGNSHLANGIAGSMATLLHDAVMNPAEVVKQRLQMYNSQHQSALSCIRTVWRTEGLGAFYRSYTTQLTMNIPFQSIHFITYEFLQEQVNPRRDYNPQS 236          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: MFRN1_MOUSE (Mitoferrin-1 OS=Mus musculus GN=Slc25a37 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.575e-32
Identity = 73/188 (38.83%), Postives = 113/188 (60.11%), Query Frame = 2
Query:   95 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVP---NNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL---MEFDPNS 640
            M +G++AG +EH  MYPVD++KTRMQ +          +  A   ++  EG     RG+  M +GAGPAHA+YF+ YE  K   +       N+ +A+ V+G  +T+  DAV+ P ++VKQRLQ+ +S ++    C++ V   EG+GAFY SY T + MN PFQ++HF TYE ++  +    +++P S
Sbjct:   49 MTAGAMAGILEHSIMYPVDSVKTRMQSLNPDPKARYTSIYGALKRIMHTEGFWRPLRGLNVMMMGAGPAHAMYFACYENMKRTLNDVFSHQGNSHLANGVAGSMATLLHDAVMNPAEVVKQRLQMYNSQHQSAFSCIRTVWRTEGLGAFYRSYTTQLTMNIPFQSIHFITYEFLQEQVNPRRDYNPQS 236          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: MRS3_YEAST (Mitochondrial RNA-splicing protein MRS3 OS=Saccharomyces cerevisiae GN=MRS3 PE=1 SV=4)

HSP 1 Score: 135.961 bits (341), Expect = 3.026e-31
Identity = 78/216 (36.11%), Postives = 117/216 (54.17%), Query Frame = 2
Query:   95 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF---SGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVK 733
            +I+G+ AG +EH  M+P+D LKTR+Q   A + L    +    S +   EG    ++G+ ++ LGAGPAHAVYF  YE CK+     S    ++    A+SG  +T ASDA++ P D +KQR+QL +S    V    K++   EG+ AFY SY TT++MN PF A +F  YE+  + L     N  ++ + ++H                PLD +K
Sbjct:   37 LIAGAFAGIMEHSVMFPIDALKTRIQSANA-KSLSAKNMLSQISHISTSEGTLALWKGVQSVILGAGPAHAVYFGTYEFCKKNLIDSSDTQTHHPFKTAISGACATTASDALMNPFDTIKQRIQLNTS--ASVWQTTKQIYQSEGLAAFYYSYPTTLVMNIPFAAFNFVIYESSTKFL-----NPSNEYNPLIHCLCGSISGSTCAAITTPLDCIK 244          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: MRS4_YEAST (Mitochondrial RNA-splicing protein MRS4 OS=Saccharomyces cerevisiae GN=MRS4 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.150e-30
Identity = 78/218 (35.78%), Postives = 118/218 (54.13%), Query Frame = 2
Query:   95 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVPNNSMAH-----AVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVK 733
            +++G+ AG +EH  M+P+D LKTR+Q  G ++      + Q  S +  +EG    ++G+ ++ LGAGPAHAVYF  YE CK       P +   H     A+SG  +T+A+DA++ P D VKQRLQL ++    V +  K++   EG  AFY SY TT+ MN PF A +F  YE+  +    F+P +  +   ++H                PLD +K
Sbjct:   27 LLAGAFAGIMEHSLMFPIDALKTRVQAAGLNKAASTGMISQ-ISKISTMEGSMALWKGVQSVILGAGPAHAVYFGTYEFCKARLIS--PEDMQTHQPMKTALSGTIATIAADALMNPFDTVKQRLQLDTN--LRVWNVTKQIYQNEGFAAFYYSYPTTLAMNIPFAAFNFMIYESASKF---FNPQNSYNP--LIHCLCGGISGATCAALTTPLDCIK 234          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: MCFJ_DICDI (Mitochondrial substrate carrier family protein J OS=Dictyostelium discoideum GN=mcfJ PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.558e-19
Identity = 68/261 (26.05%), Postives = 108/261 (41.38%), Query Frame = 2
Query:   83 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPA----GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVPNNS----MAHAVSGVFSTVASDAVITPMDMVKQRLQLKSS----PYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEF----------------------DPNSGS----DESLVVHXXXXXXXXXXXXXXXXPLDVVKPRCRAG 751
            F+ F++ GSI      + M+P+D ++TR+QV G+   +       G    F  +++LEG    Y+G      G   + A+YF  YE  K+ F  G  ++         +SG  S   +  +  P D+  Q +Q++ S     YKG  D  K++  E GI   Y  +  T+I N P+  + + TYE  K  L +F                      D N+ S    +E  ++H                PLDV K R + G
Sbjct:   33 FYNFLLGGSI-----DLLMFPLDVIRTRLQVQGSQNVIQSFPQYNGTFDGFKKLIRLEGKRALYKGFLTSECGYLCSRAIYFGSYEFVKQGFLKGRSDSDSDLLFVTTISGAISEALASVIWVPFDVATQSVQIQGSLSKPKYKGGSDVFKKIYGERGIKGLYKGFGATIIRNVPYSGIWWGTYEISKSKLTQFNIRQKLGLKERSSHSLAVSAEIDKNNPSHEVENEDPIIHFISGFFAAVFATSITNPLDVAKTRLQTG 288          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: YM39_YEAST (Uncharacterized mitochondrial carrier YMR166C OS=Saccharomyces cerevisiae GN=YMR166C PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.657e-19
Identity = 75/277 (27.08%), Postives = 119/277 (42.96%), Query Frame = 2
Query:    8 TPDFHPEISVNP-----SKTKETTIH--------DGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPA-GFYRGIAAMGLGAGPAHAVYFSVYELCKE-FFSGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLK---SSP-------YKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVV--HXXXXXXXXXXXXXXXXPLDVVKPRCRAGWP 757
            TP  HP  S        +  K+  +H        D    W  ++SG I G +   AM+ +DT+KTR Q  GA        +  A+ ++   EG   G Y G  A  LG+ P+ A++F  YE  K         N+++ H  +G      S  V  P +++K RLQL+   ++P       Y  + + +K V+ EEG  + +  Y+ T+  + PF A+ FA YE  ++   + +   G D  L +                   P+DVVK R +   P
Sbjct:   15 TPHDHPPTSEGTPDQPNNNRKDDKLHKKRGDSDEDLSPIWHCVVSGGIGGKIGDSAMHSLDTVKTRQQ--GAPNVKKYRNMISAYRTIWLEEGVRRGLYGGYMAAMLGSFPSAAIFFGTYEYTKRTMIEDWQINDTITHLSAGFLGDFISSFVYVPSEVLKTRLQLQGRFNNPFFQSGYNYSNLRNAIKTVIKEEGFRSLFFGYKATLARDLPFSALQFAFYEKFRQLAFKIEQKDGRDGELSIPNEILTGACAGGLAGIITTPMDVVKTRVQTQQP 289          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: YIA6_YEAST (Uncharacterized mitochondrial carrier YIL006W OS=Saccharomyces cerevisiae GN=YIL006W PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.657e-19
Identity = 59/181 (32.60%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   98 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPL---HPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVPN-NSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS------SPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 610
            +SG+ AG +  +A+ P+D  KTR+Q  G        +  G+    S++++ EGP G Y+G+  + LG  P   +YFSVYE  K+FF G  P  + +A + + + +  AS  +  P+ +VK RL L+S      + YKG  D  +++  +EG  A YA      ++     A+HF  YE +K
Sbjct:   82 LSGAFAGFLSGVAVCPLDVAKTRLQAQGLQTRFENPYYRGIMGTLSTIVRDEGPRGLYKGLVPIVLGYFPTWMIYFSVYEFSKKFFHGIFPQFDFVAQSCAAITAGAASTTLTNPIWVVKTRLMLQSNLGEHPTHYKGTFDAFRKLFYQEGFKALYAGL-VPSLLGLFHVAIHFPIYEDLK 261          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.837e-18
Identity = 63/225 (28.00%), Postives = 104/225 (46.22%), Query Frame = 2
Query:   80 EFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSG-GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL-KSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKPRCRA 748
            ++W+ +++G IAG+V   +  P+D LK  MQV G+       G RQ    ++K  G    +RG     +   P  AV F VYE  K+  +  G    +    +SG  +   +   I PM+++K RL + K+  Y G+ DC K++L  EG GAFY  Y   ++   P+  +  A YE +K   ++       +  ++V                 PL +V+ R +A
Sbjct:  193 QWWRQLLAGGIAGAVSRTSTAPLDRLKVMMQVHGSKSMNIFGGFRQ----MIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISGSMAGATAQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVLVLLGCGALSSTCGQLASYPLALVRTRMQA 413          

HSP 2 Score: 70.8626 bits (172), Expect = 1.196e-11
Identity = 47/183 (25.68%), Postives = 82/183 (44.81%), Query Frame = 2
Query:   98 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVPNNSMAHAV-----SGVFSTVASDAVITPMDMVKQRLQ----LKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 619
            ISGS+AG+     +YP++ +KTR+ V    +    +G+      +LK EG   FY+G     LG  P   +  +VYEL K  +      +S+   V      G  S+        P+ +V+ R+Q    L+ +P   +    +R++ +EG+   Y       +   P   + +  YE +K+ L
Sbjct:  291 ISGSMAGATAQTFIYPMEVMKTRLAV---GKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVLVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGAPQLNMVGLFRRIISKEGLPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 470          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.545e-18
Identity = 62/224 (27.68%), Postives = 106/224 (47.32%), Query Frame = 2
Query:   83 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVPNNSMAHA-VSGVFSTVASDAVITPMDMVKQRLQL-KSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKPRCRA 748
            +W+ +++G  AG+V      P+D LK  MQV  ASR  +   +   F+ +++  G    +RG     +   P  A+ F  YE  K           +    V+G  + V + + I PM+++K R+ L K+  Y+GV DC K++L++EG+ AFY  Y   ++   P+  +  A YE +K A ++    S +D  + V                 PL +V+ R +A
Sbjct:  231 WWRHLVAGGGAGAVSRTCTAPLDRLKVLMQV-HASRS-NNMSILGGFTHMIREGGFRSLWRGNGINVIKIAPESAIKFMAYEQIKRIIGSNQETLGIHERFVAGSLAGVIAQSSIYPMEVLKTRMALRKTGQYQGVLDCGKKILLQEGLSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTVSSTCGQLASYPLALVRTRMQA 452          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: S2541_HUMAN (Solute carrier family 25 member 41 OS=Homo sapiens GN=SLC25A41 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.545e-18
Identity = 57/195 (29.23%), Postives = 95/195 (48.72%), Query Frame = 2
Query:   86 WQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSG--GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLK-SSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLV 661
            W+F++SG++AG+V      P+D  K  MQV  +        +     S+++  G    +RG     L   P +A+ FSV+E CK +F G  G P       ++G  +   S  +I PM+++K RL L+ +  YKG+ DC +++L  EG  A Y  Y   ++   P+     A YE ++   ++   + G    LV
Sbjct:   93 WKFLLSGAMAGAVSRTGTAPLDRAKVYMQVYSSKTNF--TNLLGGLQSMVQEGGFRSLWRGNGINVLKIAPEYAIKFSVFEQCKNYFCGIQGSPP-FQERLLAGSLAVAISQTLINPMEVLKTRLTLRRTGQYKGLLDCARQILQREGTRALYRGYLPNMLGIIPYACTDLAVYEMLQCFWVKSGRDMGDPSGLV 284          
The following BLAST results are available for this feature:
BLAST of DY259974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
MFRN1_RAT3.575e-3238.30Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2... [more]
MFRN1_MOUSE3.575e-3238.83Mitoferrin-1 OS=Mus musculus GN=Slc25a37 PE=1 SV=1[more]
MRS3_YEAST3.026e-3136.11Mitochondrial RNA-splicing protein MRS3 OS=Sacchar... [more]
MRS4_YEAST1.150e-3035.78Mitochondrial RNA-splicing protein MRS4 OS=Sacchar... [more]
MCFJ_DICDI1.558e-1926.05Mitochondrial substrate carrier family protein J O... [more]
YM39_YEAST2.657e-1927.08Uncharacterized mitochondrial carrier YMR166C OS=S... [more]
YIA6_YEAST2.657e-1932.60Uncharacterized mitochondrial carrier YIL006W OS=S... [more]
SCMC1_RABIT3.837e-1828.00Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENLA6.545e-1827.68Calcium-binding mitochondrial carrier protein SCaM... [more]
S2541_HUMAN6.545e-1829.23Solute carrier family 25 member 41 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259974 ID=DY259974; Name=DY259974; organism=Citrus clementina; type=EST; length=926bp
ATATCGGACCCCCGATTTCCACCCCGAAATCTCGGTAAACCCCTCCAAAA
CAAAAGAAACAACAATACACGACGGCCTCGAGTTCTGGCAGTTCATGATT
TCCGGGTCCATCGCGGGCTCCGTTGAGCACATGGCCATGTACCCAGTTGA
CACCCTCAAGACCCGCATGCAAGTCATAGGGGCGTCTCGCCCGCTTCATC
CCGCCGGCGTCCGTCAAGCCTTTAGCTCAGTGCTCAAGCTGGAGGGCCCG
GCAGGGTTTTACCGAGGAATTGCAGCTATGGGACTCGGCGCAGGACCCGC
ACACGCTGTTTACTTCTCGGTTTACGAGCTCTGTAAAGAGTTCTTCTCAG
GTGGGGTCCCTAATAACTCAATGGCTCACGCTGTGTCGGGTGTCTTCTCG
ACGGTGGCGAGTGATGCTGTGATTACGCCCATGGATATGGTGAAGCAGAG
GCTTCAGCTCAAGAGCAGTCCATACAAGGGAGTCCCAGACTGTGTCAAGA
GAGTGTTAGTTGAGGAAGGAATCGGCGCGTTTTACGCTTCATATAGGACT
ACGGTGATCATGAACGCGCCGTTTCAAGCAGTTCATTTCGCCACTTATGA
GGCAGTAAAGAGAGCTTTGATGGAATTTGACCCAAACAGTGGGAGTGATG
AGAGTTTAGTGGTTCATGCAACAGCCGGTGCGGCTGCCGGAGCTCTGGCC
GCTACCTTGACAACGCCCCTTGATGTTGTAAAACCCCGTTGCCGTGCCGG
GTGGCCGTGGGCGGGATAGATTTTCAAGCGTTCAATTGGGAATGGCATGA
AACCGGCCGGGGGAAAAAGGAATCCGGGGGCCTTTGGAAGGGGGGACCCC
CCAAAGGCGGTTACGGGTCCGGCCGCCCCCATCTGGGGGGTCAAAAACAA
ACCACCAAAATTCTTTCTTACACCAT
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