DY259974

Overview
NameDY259974
Unique NameDY259974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length926
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: TPC1_ASPOR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus oryzae GN=tpc1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 51/191 (26.70%), Postives = 90/191 (47.12%), Query Frame = 2
Query:   98 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSG--GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS-----------SPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFD 631
            ++G+ AG +   + YP+D L+TR    G  R      +  +   + + EGP GF+RG +A      P   ++F+ YE  +   SG   +P  S   A +GV ++V +   + P+D+V++RLQ++              Y+GV + +  ++  +G+   Y     ++   AP  AV   TYE     L E +
Sbjct:  127 VAGATAGGLATASTYPLDLLRTRFAAQGTERVY--TSLYASVRDIAQNEGPKGFFRGCSAAVGQIVPYMGLFFATYESLRPVMSGLHDLPFGS-GDAAAGVVASVLAKTGVFPLDLVRKRLQVQGPTRSKYVHRNIPEYQGVYNTMAMIVRTQGMRGLYRGLTVSLFKAAPASAVTMWTYEKSLHYLRELE 314          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: SFC1_YEAST (Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae GN=SFC1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = 2
Query:   95 MISGSIAGSVEHMAMYPVDTLKTRMQV---IGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF----SGGVP--NNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLK----SSP-----YKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEF 628
            +++G  AG  E +  +P+DT+K RMQ+   +     + P G  +   ++ + EG    Y+G+ A+ +G  P  A+ FS YE  +       SG V   N  +A   +G+   V    V+ PM++VK RLQ +    S P     Y         ++ EEG+ A Y     T    A  Q  +F  Y  +K  L  +
Sbjct:   14 LMAGGTAGLFEALCCHPLDTIKVRMQIYRRVAGIEHVKPPGFIKTGRTIYQKEGFLALYKGLGAVVIGIIPKMAIRFSSYEFYRTLLVNKESGIVSTGNTFVAGVGAGITEAV---LVVNPMEVVKIRLQAQHLTPSEPNAGPKYNNAIHAAYTIVKEEGVSALYRGVSLTAARQATNQGANFTVYSKLKEFLQNY 206          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: S2540_XENLA (Solute carrier family 25 member 40 OS=Xenopus laevis GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 37/146 (25.34%), Postives = 79/146 (54.11%), Query Frame = 2
Query:  191 PLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVPNNS-MAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALME 625
            P H  G   AF  +++ EG    + G+    + A PA  +YF+ Y+  +      +P  + +A  V+G  + + S  +I+P+++++ ++Q +   YK +  C++  L ++G  + +  +  TV+ + PF A+++  YE VK++L +
Sbjct:   82 PGHFRGTMDAFVQIIRSEGIKSLWSGLPPTLVMAVPATVIYFTFYDQLRVILIRRMPERAEIASLVAGATARLGSATLISPLELIRTKMQYRPLSYKELMICIQSSLAKDGWLSLWKGWGPTVLRDVPFSALYWHNYELVKQSLCQ 227          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: AGC1_ASHGO (Mitochondrial aspartate-glutamate transporter AGC1 OS=Ashbya gossypii GN=AGC1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 53/187 (28.34%), Postives = 87/187 (46.52%), Query Frame = 2
Query:  104 GSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKL---EGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVPNNSM-AHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKR------VLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDP 634
            GS+AG +  M +YP+D +KTRMQ   A R    +  + +   +LK+   EG  G Y G+    +G  P  A+  +V +  +   +G     S+    +SG  +         P+++VK RLQ+KS     V D  +       V+   G+   Y      ++ + PF A++F TY  +K  +  FDP
Sbjct:  530 GSVAGCIGAMVVYPIDMVKTRMQ---AQRDF--SKYKNSIDCLLKILSKEGVRGLYSGLGPQLIGVAPEKAIKLTVNDHMRATLAGRDGKLSLPCEIISGATAGACQVVFTNPLEIVKIRLQVKSD---YVADAARNSVNAISVIKNLGLIGLYRGAGACLLRDIPFSAIYFPTYAHIKSNVFNFDP 708          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: ADT_CHLKE (ADP,ATP carrier protein OS=Chlorella kessleri PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 54/201 (26.87%), Postives = 91/201 (45.27%), Query Frame = 2
Query:   80 EFWQFMI----SGSIAGSVEHMAMYPVDTLKTRMQV-IGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCK-EFFSGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSS---PYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDES 655
            +FW+F +    SG +AG+   + +YP+D  +TR+   +G+ +     G+    S V+K  GP   Y+G      G       YF +Y+  K   F      N  A        T  +  +  P D V++RL ++S     Y G  DC ++V  +EG+ AF+    + V+  A   A     Y+ +K+ +   +PN+ S  S
Sbjct:  142 DFWRFFVVNLASGGLAGAGSLLIVYPLDFARTRLAADVGSGKSREFTGLVDCLSKVVKRGGPMALYQGFGVSVQGIIVYRGAYFGLYDTAKGVLFKDERTANFFAKWAVAQAVTAGAGVLSYPFDTVRRRLMMQSGGERQYNGTIDCWRKVAQQEGMKAFFKGAWSNVLRGAG-GAFVLVLYDEIKKFI---NPNAVSSAS 338          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: YQ51_CAEEL (Uncharacterized mitochondrial carrier C16C10.1 OS=Caenorhabditis elegans GN=C16C10.1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.146e-12
Identity = 61/262 (23.28%), Postives = 109/262 (41.60%), Query Frame = 2
Query:  116 GSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYE----------LCKEFFSGG--VPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDES-LVVHXXXXXXXXXXXXXXXXPLDVVKPRCRAGWPWAG*IFKRSIGNGMKPAGGKRNPGAFGRGDPPKAV 862
            G +EH+ +    + + R       RP +  G   A   + + EG    + G++   + A PA   YF+ Y+           C+  FS     P +  A AV+G+ +   +  V++P++M++ ++Q K   Y  +   V+  +  +GI +FY  +  T++ + PF  +++A Y+  K  L       G D +  VV                 P DV+K  C+     +     +SI   +K     R   AF  G  P+ V
Sbjct:   82 GLMEHVCV----SCEVRKPCEWYQRPGNFRGTADAIVKIARHEGIRSLWSGLSPTMVMALPATVFYFTTYDNLSVWLKKKMCCRRAFSPEKWTPPDWSAAAVAGIVARTIAVTVVSPIEMIRTKMQSKRLTYHEIGHLVRSSMATKGISSFYLGWTPTMLRDIPFSGIYWAGYDLFKTNLQR---RQGPDHNPFVVSFVSGAAAGVVASIFTHPFDVIKTNCQIRIGGSIDDMNKSITTVIKDMYHSRGISAFSSGLVPRLV 336          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: TPC_BOVIN (Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.146e-12
Identity = 51/196 (26.02%), Postives = 88/196 (44.90%), Query Frame = 2
Query:   62 TIHDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVP-----NNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL-----------KSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYE 601
            ++ D  +F    + G ++  V  +A++PVD L+TR    G  R      +R A  ++ + EGP  FY+G+    +   P     FS+Y   K  +   +P     N +  + + G  + V S  +  P+D+ K+RLQ+           +   YKG+ DC  +VL EEG    +     +++  A    + F  YE
Sbjct:  111 SVRDARDFSVHFLCGGLSACVATLAVHPVDVLRTRFAAQGEPRVYKT--LRDAVVTMYRTEGPLVFYKGLNPTLIAIFPYAGFQFSIYSSLKRAYEWALPAEGKKNGNFKNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEQARASFGQVRSYKGLLDCAGQVLREEGAQGCFKGLSPSLLKAALSTGLVFFWYE 304          

HSP 2 Score: 69.3218 bits (168), Expect = 3.479e-11
Identity = 60/229 (26.20%), Postives = 96/229 (41.92%), Query Frame = 2
Query:   98 ISGSIAGSVEHMAMYPVDTLKTRMQV----IGASRP-LHPAGVRQAFSSVLKLEGPAGFYRG-IAAMGLGAGPAHAVYFSVYELCKEFFSGGVPNNSM---AHAVSGVFSTVASDAVITPMDMVKQRLQLKSSP--YKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKPRCRAG 751
            ++GS++G V  + + P+D +K R Q+    +  S P     G+ QA   +L+ EGP  F++G I A  L  G   AV F  +E   E        ++     H + G  S   +   + P+D+++ R   +  P  YK + D V  +   EG   FY     T+I   P+    F+ Y ++KRA     P  G       +                PLD+ K R + G
Sbjct:   20 VAGSVSGLVTRVLISPLDVIKIRFQLQIERLSRSDPNAKYHGILQAGRQILQEEGPTAFWKGHIPAQLLSIGYG-AVQFLSFEALTELVHRASVRDARDFSVHFLCGGLSACVATLAVHPVDVLRTRFAAQGEPRVYKTLRDAVVTMYRTEGPLVFYKGLNPTLIAIFPYAGFQFSIYSSLKRAYEWALPAEGKKNGNFKNLLCGSGAGVISKTLTYPLDLFKKRLQVG 247          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: S2539_BOVIN (Solute carrier family 25 member 39 OS=Bos taurus GN=SLC25A39 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.146e-12
Identity = 40/149 (26.85%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  191 PLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSG-GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDP 634
            P    G   AF  +++ EG    + G+ A  +   PA A YF+ Y+  K F  G  + ++  A  V+G  + + +  VI+P+++V+ +LQ +   Y+ +  CV+  + + G  + +  +  T + + PF A+++  YE VK  L    P
Sbjct:  101 PTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAAYFTAYDQLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQHLSYRELGTCVRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLSGLRP 249          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: YDE9_SCHPO (Uncharacterized mitochondrial carrier C12B10.09 OS=Schizosaccharomyces pombe GN=SPAC12B10.09 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 48/184 (26.09%), Postives = 85/184 (46.20%), Query Frame = 2
Query:   68 HDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF--SGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGA-FYASYRTTVIMNAPFQAVHFATYEAVK 610
            H  + F++ + +G  AG    ++++P+DTLKTR+Q  G                 +K  G  G YRG+ ++ +G+ P  +++F+ YE  K     SG   ++   H  S     +A+  V  P +++KQR Q          + ++ +L    +   FYA Y  T+    PF  + F  +E +K
Sbjct:   77 HSAMSFFEALGAGICAGLAVDLSLFPIDTLKTRLQAKG---------------GFVKNGGFHGVYRGLGSILVGSAPGASLFFTTYENMKSRLSQSGLGLSDPQIHMCSASLGEIAACIVRVPTEVIKQRAQASGGTLSS-RNILQTILKSNNVWRDFYAGYGITIAREIPFTLIQFPIWEHLK 244          
BLAST of DY259974 vs. ExPASy Swiss-Prot
Match: S2538_RAT (Solute carrier family 25 member 38 OS=Rattus norvegicus GN=Slc25a38 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 44/187 (23.53%), Postives = 88/187 (47.06%), Query Frame = 2
Query:   98 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHP--AGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFSGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVPDCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDE 652
            + GSI+G+   +   P+D LKTR+Q +  S  + P   G+   F  V++ E   G ++G++   +   P   +YF      K++F  G P  ++   + G+ S   +   ++P+ +VK R +  +  Y+ V   ++ +   EG    +     T++ +APF  ++   Y   +  ++      G+DE
Sbjct:   52 LCGSISGTCSTLLFQPLDLLKTRLQTLQPS-DVGPRRVGMLSVFLKVVRTETLLGLWKGMSPSIVRCVPGVGIYFGTLYSSKQYFLRGHPPTALESVILGMGSRSVAGVCMSPITVVKTRYESGAYSYESVYAALRSIYCSEGSRGLFRGLTATLLRDAPFSGLYLMFYSQTRATVLH-----GADE 232          
The following BLAST results are available for this feature:
BLAST of DY259974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
TPC1_ASPOR2.409e-1226.70Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
SFC1_YEAST2.409e-1228.06Succinate/fumarate mitochondrial transporter OS=Sa... [more]
S2540_XENLA2.409e-1225.34Solute carrier family 25 member 40 OS=Xenopus laev... [more]
AGC1_ASHGO2.409e-1228.34Mitochondrial aspartate-glutamate transporter AGC1... [more]
ADT_CHLKE2.409e-1226.87ADP,ATP carrier protein OS=Chlorella kessleri PE=3... [more]
YQ51_CAEEL3.146e-1223.28Uncharacterized mitochondrial carrier C16C10.1 OS=... [more]
TPC_BOVIN3.146e-1226.02Mitochondrial thiamine pyrophosphate carrier OS=Bo... [more]
S2539_BOVIN3.146e-1226.85Solute carrier family 25 member 39 OS=Bos taurus G... [more]
YDE9_SCHPO4.109e-1226.09Uncharacterized mitochondrial carrier C12B10.09 OS... [more]
S2538_RAT4.109e-1223.53Solute carrier family 25 member 38 OS=Rattus norve... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YN03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259974 ID=DY259974; Name=DY259974; organism=Citrus clementina; type=EST; length=926bp
ATATCGGACCCCCGATTTCCACCCCGAAATCTCGGTAAACCCCTCCAAAA
CAAAAGAAACAACAATACACGACGGCCTCGAGTTCTGGCAGTTCATGATT
TCCGGGTCCATCGCGGGCTCCGTTGAGCACATGGCCATGTACCCAGTTGA
CACCCTCAAGACCCGCATGCAAGTCATAGGGGCGTCTCGCCCGCTTCATC
CCGCCGGCGTCCGTCAAGCCTTTAGCTCAGTGCTCAAGCTGGAGGGCCCG
GCAGGGTTTTACCGAGGAATTGCAGCTATGGGACTCGGCGCAGGACCCGC
ACACGCTGTTTACTTCTCGGTTTACGAGCTCTGTAAAGAGTTCTTCTCAG
GTGGGGTCCCTAATAACTCAATGGCTCACGCTGTGTCGGGTGTCTTCTCG
ACGGTGGCGAGTGATGCTGTGATTACGCCCATGGATATGGTGAAGCAGAG
GCTTCAGCTCAAGAGCAGTCCATACAAGGGAGTCCCAGACTGTGTCAAGA
GAGTGTTAGTTGAGGAAGGAATCGGCGCGTTTTACGCTTCATATAGGACT
ACGGTGATCATGAACGCGCCGTTTCAAGCAGTTCATTTCGCCACTTATGA
GGCAGTAAAGAGAGCTTTGATGGAATTTGACCCAAACAGTGGGAGTGATG
AGAGTTTAGTGGTTCATGCAACAGCCGGTGCGGCTGCCGGAGCTCTGGCC
GCTACCTTGACAACGCCCCTTGATGTTGTAAAACCCCGTTGCCGTGCCGG
GTGGCCGTGGGCGGGATAGATTTTCAAGCGTTCAATTGGGAATGGCATGA
AACCGGCCGGGGGAAAAAGGAATCCGGGGGCCTTTGGAAGGGGGGACCCC
CCAAAGGCGGTTACGGGTCCGGCCGCCCCCATCTGGGGGGTCAAAAACAA
ACCACCAAAATTCTTTCTTACACCAT
back to top