DY259984

Overview
NameDY259984
Unique NameDY259984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 6.108e-73
Identity = 132/224 (58.93%), Postives = 158/224 (70.54%), Query Frame = 1
Query:  142 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPT 795
            GW    ATFY              YG+LYS GYGTNTAALST LFN+G SCG CY + C+   D ++C+ G S+ +TATN CPPN AL ND GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG  YF LVLV+NV G G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF+   VT+  G T     + P  W FG T
Sbjct:   33 GWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFK---VTSSDGQTLTFLDVAPAGWTFGQT 253          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 8.820e-72
Identity = 131/226 (57.96%), Postives = 158/226 (69.91%), Query Frame = 1
Query:  142 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSK--TGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPT 795
            GW  G ATFY              YGNLY+QGYGT TAALSTALF++G SCG CY + C+   DP+WC  G S+ VTATNFCPPN AL +D+GGWCNPP  HFDMA+PA+ +I  YR GIVP++FRR+PC ++GG+RFTV G  YF LVLVTNV  AG V S+ ++GS+   GW AMSRNWG NWQS +YL+GQ LSF+   VTA  G T +   + PP W FG T
Sbjct:   33 GWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFR---VTATDGQTIVFAGVVPPSWRFGQT 255          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 4.377e-71
Identity = 125/224 (55.80%), Postives = 158/224 (70.54%), Query Frame = 1
Query:  142 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTG-WQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTMLCPPIWHFGPTLE 801
            GW   HATFY              YGNLY+ GY TNTAALSTALFN+G SCG CY++ C+    P+WCL G SI +TATNFCPPN A ++DNGGWCNPP  HFDMA+PAFL IA+Y+AGIVPI ++++ C + GG+RFT+NG +YF LVL++NV G G++  V IKGSK+  W+ MSRNWG N+QSN+YLNGQSLSF+ Q     +     + P  W FG + +
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQSFK 250          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.837e-70
Identity = 128/219 (58.45%), Postives = 151/219 (68.95%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN-DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTMLCPPIWHFGPT 795
            W    ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ + C+    +WC PG SI VTATNFCPPN ALS D GGWCNPP +HFDM++PA+  IA YRAGIVP+++RR+PC + GGIRF VNGHSYF LVLVTNV G+G V  + IKGS TGW AMSRNWG NWQSN+ L+GQ+LSF+ Q     +     + P  W FG T
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGAT 243          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.837e-70
Identity = 124/224 (55.36%), Postives = 159/224 (70.98%), Query Frame = 1
Query:  151 SGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE-NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEGG 807
            SG ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG CY++ C+ ++ KWC  G S+ +TATN CPP+ +  +++GGWCNPP QHFDMA+PA+ QI  YR GIVP++F+R+ C +KGG+RFT+NG+SYF LVL+TNV G G + SV IKG+KTGW  MSRNWG NWQ+N+YLN Q++SF    VT+  G T +   + P  W FG T   G
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFS---VTSTAGKTLVFEDVAPSNWQFGQTFTSG 246          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 4.097e-69
Identity = 121/221 (54.75%), Postives = 148/221 (66.97%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTG-WQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTMLCPPIWHFGPT 795
            WQ  HATFY              YGNLYSQGYGT  AALSTALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YF LVLVTNV  AG + S+ + GS T  W  M+RNWG  W S +YL GQ LSF+         + T + PP W FG T
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQT 259          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 5.351e-69
Identity = 127/236 (53.81%), Postives = 162/236 (68.64%), Query Frame = 1
Query:  139 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN----DPKWCLPG----SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIK---GSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEG 804
            G W   HATFY              YGN Y QGYGT+TAALS  +F +GLSCG+C+E++C      D + CLP     SI+VTAT+ CP N AL  D GGWCNPPL HFD+++PAFL+IA++++GIVP+S+RR+ C +KGG+RFT+NGHSYFNLVLV+NV GAGDVH+V++K   G K  WQAM+RNWG NWQS + L+GQ+LSF    VT G   + +   + P  W FG T  G
Sbjct:   28 GRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSF---TVTTGDRRSVVSYNVAPAGWAFGQTFTG 260          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 4.530e-68
Identity = 121/221 (54.75%), Postives = 148/221 (66.97%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGS-KTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTMLCPPIWHFGPT 795
            WQ  HATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YFNLVLVTNV   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF+   +     +   + P  W FG T
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQT 254          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 1.318e-67
Identity = 121/223 (54.26%), Postives = 152/223 (68.16%), Query Frame = 1
Query:  142 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKT-GWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLT-TMLCPPIWHFGPT 795
            GW   HATFY              YGNLY+QGYGT TAALSTALFN+GL+CG CY++ C+   D  WC PG S+ +TATNFCPPN  L +D+GGWCNPP  HFDMA+PA+ +I  YR GI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNV  AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ LSF+   +T G  L    +  P W FG T
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFR-VTITDGQTLVFPNVVRPGWRFGQT 254          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 2.936e-67
Identity = 123/235 (52.34%), Postives = 156/235 (66.38%), Query Frame = 1
Query:  109 CFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTML---CPPIWHFGPT 795
            C         GGW SG ATFY              YGNLY+QGYG   AALSTALFN G SCG CY + C+    P+WC  G+ + +TATN CPPN AL+ND+GGWCNPP  HFDM++PA+  I  YRAGIVP+ ++++ C ++GG+RFTV+G +YF LVL+TNV G+G V ++S+KGSKTGW  ++RNWG NWQ NS L GQ+LSF+   VT+  G T  +    P  W FG T
Sbjct:   15 CITSASAAAAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFR---VTSTGGQTLQINSVVPEWWEFGTT 246          
The following BLAST results are available for this feature:
BLAST of DY259984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
EXPA1_ORYSJ6.108e-7358.93Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP29_ORYSJ8.820e-7257.96Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH4.377e-7155.80Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXPA8_ORYSJ2.837e-7058.45Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ2.837e-7055.36Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ4.097e-6954.75Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ5.351e-6953.81Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ4.530e-6854.75Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ1.318e-6754.26Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ2.936e-6752.34Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259984 ID=DY259984; Name=DY259984; organism=Citrus clementina; type=EST; length=995bp
CTTTTTCTTAACAAATAAACACATAAACATAAGCAGCCAGCAGTAGCAGC
CATGGCCAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTTGTTTGTGC
TCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTGGCAA
AGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAATGGG
TGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACTAACA
CTGCAGCACTTAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCA
TGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTC
CATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTA
ACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCT
GAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATCGTCCCAAT
TTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCG
TCAATGGACACTCATACTTCAACCTGGTTTTGGTCACAAATGTCCGAGGA
GCAGGAGATGTACATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCA
AGCAATGTCAAGGAACTGGGGCCCAAATTGGCAGAGCAATTCTTATCTTA
ACGGCCAAAGTCTTTCTTTCCAGTGACAGCCAGTGACGGCAGGAATGGGA
CTCACCACCATGTTGTGCCCGCCAATTTGGCATTTTGGGCCAACCCTTGA
GGGTGGGTCCGTTTTAAATTTTAAAAATTTAAAAAAGTGGAACCAAAATT
GGAAATTTAATTGAAATTTGGCCTTTGGGTTTGGGAAAGGAAAAAGGGTG
AAAAAAGGGGGTAAGGGAAAGCCGAAAGGCCGGCCCCAAGTTGGCTCGGC
TTTGGTACCGGGGGGGGCCCCGTTGCGCCCCCCCCCCAAGCCCTC
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