DY259988

Overview
NameDY259988
Unique NameDY259988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1032
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11745 contig Ccv1_Contig11745:705..1737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_ERWCT (Glucose-1-phosphate adenylyltransferase OS=Erwinia carotovora subsp. atroseptica GN=glgC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 9.088e-27
Identity = 79/294 (26.87%), Postives = 141/294 (47.96%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            ++IL+GDH+Y+MDY   + +H + GA+ T++CLP+    AS FG+M ++ + R+  F+EKP   D      D   + L           ASMG+Y+F  + L  LL   R    +A+DFG ++IP   +++   A+ F           + YW D+GT+ +++ ANL L +  P    YD   PI ++  +LPP                     G  ++ S + HSV+  R R+N+   +  T+               + P+    V +G + +++ C++D+   + + ++I
Sbjct:  136 MVILAGDHIYKMDYSRMLIDHVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKP---DNPTPMPDNPDMAL-----------ASMGIYVFNADYLYQLLETDRNASDSAHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDEHQYWRDVGTLEAYWRANLDLASVTPELDVYDRHWPIRSAIESLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVTHSVLFPRVRVNSFCSIDSTV---------------ILPD----VNVGRSCRLRRCVIDRACHLPEGMVI 396          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC2_PSEA6 (Glucose-1-phosphate adenylyltransferase 2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.187e-26
Identity = 83/286 (29.02%), Postives = 136/286 (47.55%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLFND------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIAN 846
            V+ILSGDH+Y MDY + + +H +SGA +T+SC+P+  +  A  FG+M ++ + R+  F EKP+                +    +    +ASMG Y+F  E L   L+       +  DFG +IIP+   +  + AY F++      YW D+GT+ SF+ AN+ L +  P  + YD   PI+T +  LPP                S ++   I       +S   +NVH+            ++ E + L P+    V I  N KIK+ I+D+   + +  +I +
Sbjct:  131 VMILSGDHIYSMDYANILAHHVESGAKMTVSCMPVPIEEAAGAFGVMSVDEDYRILGFEEKPENP--------------TPLPNDPTRCLASMGNYVFDTEFLFEHLKHDAQNEGSERDFGKDIIPSIIKDHPVFAYPFSNDDGEVSYWRDVGTLDSFWLANMELVSPKPPLNLYDKKWPIWTYQEQLPPAKFVWEEYNRCGAAIDSVVSGGCIISGATVRKSLCFSNVHVHS---------YSEIEESVLLPD----VEIKRNCKIKKAIIDRGCIVPEGTVIGH 389          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_THICR (Glucose-1-phosphate adenylyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.550e-26
Identity = 82/291 (28.18%), Postives = 132/291 (45.36%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQFLKAYLFND------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            D VL+L GDH+Y MDY   +  H +SGAD+TI C+ +    A+ FG+M ++   ++  F+EKP   D      D                +ASMG+Y+F  E L   L       N   DFG +IIP+   +  ++A+ F D      YW D+GTI S+++A+L L +  P  + YD   PI+T +  +PP                     G  I+ + I+ SV+     +++   +KD++               L P     V +  N +I+  ++DK   I +  +I
Sbjct:  130 DYVLVLGGDHIYSMDYSKMLYEHAESGADVTIGCIEVPRMEATGFGVMSVDECFKITKFTEKPANPDAMPHKPDKA--------------LASMGIYVFSTEFLFQKLIEDADNPNSSRDFGKDIIPSIIEDWQVRAFPFEDETGLPVYWRDVGTIESYWKASLDLCSITPDLNLYDEDWPIWTYQAQMPPAKFIFDDEGRRGEAIDSLVAGGCIISGARIKRSVISSGGHVHSFCLVKDSV---------------LLPR----VKVERNCRIQNAVIDKGCVIPEGTVI 387          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.550e-26
Identity = 77/290 (26.55%), Postives = 135/290 (46.55%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            VLILSGDH+Y+M+Y   ++ H+ SGAD+T++ + +D      FG++ ++N+  V  F EKPK  +L++               +     ASMG+Y+F  ++L+ +L       N   DFG  I+P    E  + ++ F D       YW D+GT+ ++++ANL L +  P+F+ YD   PI T +R  PP                     G  ++   + + V+    R+N+               E D+ +          V +G + +I+  I+D++  I +  +I
Sbjct:  120 VLILSGDHIYKMNYDLMMRQHKDSGADVTLATILIDPSETRHFGVVDVDNQSHVNGFVEKPKSTELRS-------------PYDPSKVSASMGIYIFNTDVLIPVLLKDAEDPNSKHDFGHNILPKMVGEYKIYSFNFIDENKKEALYWRDVGTLDAYYDANLDLVSVAPVFNLYDKAWPIRTHQRQYPPAKFVFAEQGRMGTALDSVVSMGCIVSGGTVRNCVLSPDVRVNS-------------FSEVDSSILFSH------VNVGRHCRIRRSIIDRDVHIPEGTVI 377          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_THENN (Glucose-1-phosphate adenylyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glgC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.025e-26
Identity = 83/277 (29.96%), Postives = 129/277 (46.57%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIP--ASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNV 834
            VL+LSGDH+Y M+Y D +  H   GAD TI+C+ +    AS FG+M  + EGR+  F EKP                      + +  +AS+G+Y+F  E L  +L        +++DFG ++IP     N+  L A+ F+ YW D+GTIRS++EANL L    P F+ YD     +T    +PP                       + +SV+    RI     +K++++    +  T+               IGEN  ++  I+ +N +IG NV
Sbjct:  120 VLVLSGDHVYAMNYNDLIDYHLLKGADGTIACMEVPLEEASRFGIMITDVEGRIVDFEEKP---------------------PKPRSNLASLGIYVFNYEFLKRVLIEDENDPNSSHDFGKDVIPKILRENKGSLYAFRFDGYWRDVGTIRSYWEANLELVLPVPPFNLYDPNWRFFTHSEEMPPAYVAPEARTSTSLISEGAEVYGEVTNSVIFQGVRIGKGTVVKNSVI----MTRTE---------------IGENCYLENVIVAENVKIGNNV 356          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB5 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=glgC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.025e-26
Identity = 70/191 (36.65%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V++LSGDH+YRMDY   +  H +SGAD+T+SCL +     A  FG+M+++ E R+  F EKP+                       +  +ASMG YLF  E L + L+       +  DFG +IIPA   +  + AY F         YW D+GT+ SF++AN+ L +  P  + YDA  PI+T +  LPP
Sbjct:  129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEAAGSFGVMEVDEEMRILGFEEKPQQP--------------KHSPGNPEMCLASMGNYLFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPP 305          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_ALTMD (Glucose-1-phosphate adenylyltransferase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=glgC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.025e-26
Identity = 72/190 (37.89%), Postives = 101/190 (53.16%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW---RFPTANDFGSEIIPASANEQFLKAYLF------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V+ILSGDH+YRMDY D +  H++SGA +T+SC+ +  +  A  FG+M ++   R+  F EKP       +  D T              +ASMG Y+F  E L   LR       +  DFG +IIP+   +  + AY F      N YW D+GTI SF+EAN+ + A  P  + YD   PI+T +  LPP
Sbjct:  131 VMILSGDHIYRMDYGDMLAKHKESGAKMTVSCMSVPLEEAAGAFGVMSVDENYRINGFEEKPANPT--PLPNDPTRC------------LASMGNYVFDTEFLFEQLRVDSENMGSQRDFGKDIIPSIIADHPVYAYPFEQSGGDNAYWRDVGTIDSFWEANMEMVAPVPQLNLYDRKWPIWTYQEQLPP 306          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHEAM (Glucose-1-phosphate adenylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.644e-26
Identity = 87/288 (30.21%), Postives = 135/288 (46.88%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISC--LPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW---RFPTANDFGSEIIPASANEQFLKAYLFN-------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIAN 846
            V+ILSGDH+YRMDY   +  H QSGAD+T+ C  +P+ +  A  FG+M++  + RV  F EKP                 S    + +  +ASMG Y+F  E L + LR       +  DFG +IIP+   E  + AY F        DYW D+GT+ +F++AN+ L +  P  + YDA  PI+T +  LPP                S ++   I       RS +   V +            ++ E A + P+    V +  N ++K  I+D+   I + ++I +
Sbjct:  131 VMILSGDHVYRMDYAGMLAAHAQSGADMTVCCQEVPVAEA-AGSFGVMEVAEDMRVVGFEEKPANP--------------SCLPHDPERCLASMGNYVFNTEFLFDQLRKDAENVSSERDFGKDIIPSIIREHKVFAYAFKSGLGAGQDYWRDVGTLDTFWQANMELLSPEPHLNLYDAKWPIWTYQEQLPPAKFVFDDEDRRGMATDSIVSGGCIISGAKVKRSVLFNEVRI---------CSYSEVEGAVILPD----VVVLRNCRLKNVIIDRGCVIPEGMVIGH 390          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_RHOBA (Glucose-1-phosphate adenylyltransferase OS=Rhodopirellula baltica GN=glgC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.644e-26
Identity = 79/287 (27.53%), Postives = 132/287 (45.99%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP---------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARI 822
            V+IL+GDHLY+M+Y   V  H + GAD+T+  L +    A  FG+M+++ + R+  F EKP+    +    D  V             +ASMG+Y+F    L   L     +  + +DFG  IIP +  +  + A+ F D       YW D+GT+ +++EAN+ L    P  + YD   PI + +  LPP                        G+ I+   +  SV+G   RIN+   ++D++     L++               V +G +++I+  I+DK  +I
Sbjct:  141 VVILAGDHLYKMNYESMVNFHHRKGADVTVGALRVSREEARQFGVMQVDTDNRLVEFQEKPENP--RPTLDDPDVC------------LASMGIYVFNTRFLFERLCDDATQPDSDHDFGKNIIPGAIEDSQVFAFPFTDENRKRDAYWRDVGTLEAYYEANMDLVGVDPQLNLYDRQWPIRSFQPQLPPPKFVFGSEGRSSRRGEALDSIVCQGAIISGGCVRRSVIGTGCRINSYAQVEDSI-----LFD--------------DVNVGRHSRIRRAIIDKGVQI 394          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_PASMU (Glucose-1-phosphate adenylyltransferase OS=Pasteurella multocida GN=glgC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.644e-26
Identity = 83/287 (28.92%), Postives = 136/287 (47.39%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXH-----GSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARI 822
            +LIL+GDH+Y+ DY   + +H  SGA  T+ C+ ++  +A++FG+M +N   +V SF EKP  KD  AM              +    +ASMG+Y+F  + L ++L        T++DFG +I+P +  E  L A+ F+            YW D+GT+ SF+++N+ L    P    YD + PI  +     P              +     G  IT + I +SV+  R +IN    +   +               + P+    V IG+N K+K CI+D+++ I
Sbjct:  139 ILILAGDHIYKQDYSQMLLDHIHSGAKCTVGCIEVEREKATEFGVMAVNENLKVKSFVEKP--KDPPAMV------------GKPNTSLASMGIYVFDADYLYDVLEREVSSPYTSHDFGKDILPKALEEGVLYAHPFSRSCMGRNTEGEIYWRDVGTLDSFWQSNIDLVCENPQLDIYDQSWPIRGNPVQTYPSKFFYKKENARPVDNSLISGGCVITDASISYSVLFDRIKINEGSQIDHCV---------------VLPQ----VTIGKNCKLKRCIIDRHSVI 392          
The following BLAST results are available for this feature:
BLAST of DY259988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_ERWCT9.088e-2726.87Glucose-1-phosphate adenylyltransferase OS=Erwinia... [more]
GLGC2_PSEA61.187e-2629.02Glucose-1-phosphate adenylyltransferase 2 OS=Pseud... [more]
GLGC_THICR1.550e-2628.18Glucose-1-phosphate adenylyltransferase OS=Thiomic... [more]
GLGC_ACIBL1.550e-2626.55Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]
GLGC_THENN2.025e-2629.96Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_SHEB52.025e-2636.65Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_ALTMD2.025e-2637.89Glucose-1-phosphate adenylyltransferase OS=Alterom... [more]
GLGC_SHEAM2.644e-2630.21Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_RHOBA2.644e-2627.53Glucose-1-phosphate adenylyltransferase OS=Rhodopi... [more]
GLGC_PASMU2.644e-2628.92Glucose-1-phosphate adenylyltransferase OS=Pasteur... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259988 ID=DY259988; Name=DY259988; organism=Citrus clementina; type=EST; length=1032bp
AATAAAGTAATTGATGATGTCCTGATTCTATCTGGGGATCACTTGTATAG
AATGGACTATATGGACTTTGTCCAGAATCATCGGCAGAGTGGTGCAGACA
TCACTATCTCTTGTCTGCCTATGGACGACCGTCGTGCCTCAGATTTTGGT
CTGATGAAAATTAACAACGAGGGAAGAGTCCCTTCTTTCAGTGAAAAGCC
TAAAGGGAAAGACTTGAAAGCAATGGCAGTAGATACAACAGTTTTGGGAC
TTTCTAAACAAGAGGCTGAAGAGAAGCCATACATTGCTTCCATGGGTGTG
TATCTCTTCAAAAAGGAGATACTTCTTAATCTTTTGAGATGGCGTTTTCC
AACTGCGAATGACTTTGGATCAGAAATAATCCCTGCATCAGCCAATGAAC
AATTCTTAAAGGCTTATCTGTTCAATGATTACTGGGAAGATATAGGAACC
ATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGCGCATCCACCGAT
GTTTAGTTTCTATGATGCCACAAAGCCCATCTACACGTCTCGAAGAAACC
TACCACCATCGAAGATTGATGATAGCAAGATTGTTGATTCCATCATATCA
CATGGAAGTTTCATAACAAGCAGCTTCATAGAACACAGTGTCGTTGGCAT
CAGATCTCGAATCAATGCTAACGTTCACTTAAAGGATACCATGATGCCTG
GAGCTGACCTTTACGAGACAGACGCTGAAGTAGCCTCACTACAACCTGAG
GGGAGAGTTCCCGTTGGAATTGGTGAAAACACAAAAATAAAAGAGTGCAT
CCTTGACAAAAATGCCCGAATAGGGAAAAATGTTATTATTGCCAATTTCG
AAGGGCTCCCAAAAGGCTGATAAATCCGCCAAAGGGTTTCCCCTCCCGCC
CCGGGGTTTCCCCGTCTTATTAAAAATTCCCGTTTACCCCCCACCGAATT
GGGAATATAAAAAAAATTTTCCCCTCCCCCCCCTCTTTTGCTTGAATTTG
GGGGTGCCACCCAAAAAAATCTTTTAAAGGAA
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