DY259991

Overview
NameDY259991
Unique NameDY259991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1388 contig Ccv1_Contig1388:1..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_MOOTA (Imidazoleglycerol-phosphate dehydratase OS=Moorella thermoacetica (strain ATCC 39073) GN=hisB PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.842e-43
Identity = 79/164 (48.17%), Postives = 119/164 (72.56%), Query Frame = 3
Query:  324 VKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            ++R T ETN+ +K+ +DGSG    S+ IPF DH+L Q+A HGL D+ V A GD+ +D+HHT ED+G+ +G A+ +ALGD+KGI+R+G    P+DEAL+ V+LD SGRP+L + L++P  ++G+  T+LVE   +++VN SG+   ++QLAG N+ H+ EA  KA
Sbjct:    7 IERQTTETNIRLKVALDGSGTWQGSSGIPFFDHLLAQMARHGLLDLKVWAEGDLEVDNHHTVEDIGICLGQAVKKALGDKKGISRYGSALVPMDEALVLVALDFSGRPYLAWGLELPPGRIGSLETELVEEFLRAMVNNSGLTLHVRQLAGHNAHHLAEALFKA 170          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_ACIAD (Imidazoleglycerol-phosphate dehydratase OS=Acinetobacter sp. (strain ADP1) GN=hisB PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.842e-43
Identity = 85/169 (50.30%), Postives = 111/169 (65.68%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            RI EV R T ET + V++N+DGSG    +T +PFLDHM+DQ+  HGLFD+ +   GD+ IDDHHT ED G+ +G A  QALGD+KG+ R+G F APLDE+L  V +DLSGRP L  D+     ++G+++  L    FQ  VN + M   I  L GKNS H IE+  KAF
Sbjct:    9 RIIEVVRNTNETKIRVRLNLDGSGQGTLNTGVPFLDHMIDQIKRHGLFDIDIHCDGDLEIDDHHTVEDCGITLGQAFAQALGDKKGLRRYGHFYAPLDESLSRVVVDLSGRPGLFMDIPFTRARIGSFDVDLFSEFFQGFVNHALMTLHIDNLKGKNSHHQIESVFKAF 177          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_JANMA (Imidazoleglycerol-phosphate dehydratase OS=Janthinobacterium sp. (strain Marseille) GN=hisB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.346e-43
Identity = 79/169 (46.75%), Postives = 104/169 (61.54%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R  E+ R T ET + V IN+DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD+HID HHT EDVG+ +G A  +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +      +GT++  L    FQ  VN + +   I  L G N+ H  E   KAF
Sbjct:    5 RTAEITRNTNETQIRVAINIDGTGQQKLNTGVPFLDHMLDQIARHGLIDLDIEAKGDLHIDAHHTVEDVGITLGQAFAKAIGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRSMIGTFDVDLTHEFFQGFVNHALVSLHIDNLRGANAHHQCETVFKAF 173          

HSP 2 Score: 31.9574 bits (71), Expect = 7.346e-43
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L PR  G IP+ KG
Sbjct:  171 KAFGRALRMAAELDPRSVGTIPSTKG 196          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_NITEC (Imidazoleglycerol-phosphate dehydratase OS=Nitrosomonas eutropha (strain C91) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.349e-43
Identity = 82/169 (48.52%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R  +V R T+ET ++V IN+DG G A+  + +PFLDHMLDQ+A HG+ D++V A GD+HID HHT ED+G+A+G AL +A+GD+KGI R+G    PLDE L  V +DLSGRP L ++       +G+++  L++  FQ  VN + M   I  LAGKN+ H  E+  KAF
Sbjct:    2 RKAQVTRNTQETQITVAINLDGQGKAELDSGVPFLDHMLDQIARHGMIDLNVAAKGDLHIDAHHTVEDIGIALGQALNRAIGDKKGIFRYGHAYVPLDETLSRVVIDLSGRPGLQFNTTFTRAVIGSFDVDLIQEFFQGFVNHAMMTLHIDNLAGKNAHHQAESIFKAF 170          

HSP 2 Score: 26.1794 bits (56), Expect = 7.349e-43
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A  + PR    IP+ KG
Sbjct:  168 KAFGRALRMAVTIDPRCDDLIPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_GEOUR (Imidazoleglycerol-phosphate dehydratase OS=Geobacter uraniireducens (strain Rf4) GN=hisB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.630e-43
Identity = 81/164 (49.39%), Postives = 113/164 (68.90%), Query Frame = 3
Query:  324 VKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            ++R+TKET + + +N+DGSG A   T +PFLDHML+  A HGLFD+ V A GDI ID HHT ED+G+ +G AL QALGD++GI R+G  T P+DE L  V++DLSGRP+L Y++++P  K+G ++ +L    FQ+L N    +  I  + G N  HI+EA  KA
Sbjct:    7 IERITKETQIKLSLNIDGSGEARVCTSVPFLDHMLNLFARHGLFDLEVEAKGDIDIDFHHTVEDIGIVLGEALKQALGDKQGIRRYGQATVPMDETLASVAVDLSGRPYLVYNVRLPKVKIGEFDVELAREFFQALTNNLAANLHINVMYGDNVHHILEACFKA 170          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_VEREI (Imidazoleglycerol-phosphate dehydratase OS=Verminephrobacter eiseniae (strain EF01-2) GN=hisB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.562e-43
Identity = 88/184 (47.83%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  285 STSSAVDSG------RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            ++S+ V SG      RI EV R T ET VSV++N+DG+G A   T I F DHMLDQ A HGL D+ V   GD+HID HHT EDVG+ +G AL +A+GD+KGI R+     PLDEAL  V +D+SGRP L+  +     ++G ++TQL    FQ  VN +G+   I  L G N+ H  E+  KAF
Sbjct:    2 TSSALVPSGLPGSLDRIAEVSRNTAETRVSVRVNLDGTGQAKLRTGIGFFDHMLDQTARHGLIDLDVDCAGDLHIDGHHTVEDVGITLGQALARAMGDKKGICRYAHAYVPLDEALSRVVVDISGRPGLHLHIPFSAGRIGDFDTQLTHEFFQGFVNHAGITLHIDNLKGVNAHHQCESVFKAF 185          

HSP 2 Score: 28.4906 bits (62), Expect = 9.562e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K FARALR A +  PR  G I + KG
Sbjct:  183 KAFARALRAALERDPRSAGRIASTKG 208          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RHIL3 (Imidazoleglycerol-phosphate dehydratase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=hisB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.570e-43
Identity = 77/170 (45.29%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  306 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            + R G V R T ET++SV +N+DG+G +  ST + F DHMLDQL+ H L D+ + A GD+HIDDHHT ED G+AIG A+ +ALGDR+GI R+      +DE +   ++DLSGRP L +++     K+GT++T+LV   F +L   +G+   I    G N+ HI E   KA
Sbjct:    6 ASRTGSVSRKTNETSISVSVNLDGTGKSTISTGVGFFDHMLDQLSRHSLIDMEIDAKGDLHIDDHHTVEDTGIAIGQAISKALGDRRGITRYASIDLAMDETMTKAAVDLSGRPFLVWNVAFSAPKIGTFDTELVREFFHALAQNAGITLHILNHYGANNHHIAETCFKA 175          

HSP 2 Score: 33.113 bits (74), Expect = 9.570e-43
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K  ARALR AT++ PR+ G +P+ KG
Sbjct:  174 KAVARALRTATEIDPRQAGRVPSTKG 199          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_NITOC (Imidazoleglycerol-phosphate dehydratase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=hisB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 9.573e-43
Identity = 82/165 (49.70%), Postives = 108/165 (65.45%), Query Frame = 3
Query:  324 VKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            V R T ET V V +N+ G G   + T +PFL+HML Q+A HGL D+ V+A+GD+HID HHT ED+G+ +G AL QALGD+ G+ R+G    PLDEAL  V LDLSGRP L+Y +  P  ++G ++  L +  FQ LVN + M   I  L G+N+ HI E   KAF
Sbjct:    8 VYRETLETRVEVDLNLSGEGHFTAETGLPFLEHMLAQVARHGLLDLTVKASGDLHIDAHHTVEDIGITLGQALQQALGDKTGLQRYGYAYVPLDEALSRVVLDLSGRPSLHYRVNYPRARIGDFDVDLFQEFFQGLVNHAAMTLHIDNLHGRNAHHIAETIFKAF 172          

HSP 2 Score: 30.0314 bits (66), Expect = 9.573e-43
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +  PRR+G + + KG
Sbjct:  170 KAFGRALRVAVEYDPRRKGQLASTKG 195          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_HERAR (Imidazoleglycerol-phosphate dehydratase OS=Herminiimonas arsenicoxydans GN=hisB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.573e-43
Identity = 78/173 (45.09%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  300 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            + + R  E+ R T ET + V IN+DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD+HID HHT EDVG+ +G A  +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +      +G ++  L    FQ  VN + +   I  L G N+ H  E   KAF
Sbjct:    1 MSTSRTAEITRNTNETQIRVAINIDGTGQQKLNTGVPFLDHMLDQIARHGLIDLDIEAKGDLHIDAHHTVEDVGITLGQAFAKAIGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRSMIGAFDVDLTREFFQGFVNHALVSMHIDNLRGANAHHQCETVFKAF 173          

HSP 2 Score: 32.3426 bits (72), Expect = 9.573e-43
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L PR  G IP+ KG
Sbjct:  171 KAFGRALRMAIELDPRSAGTIPSTKG 196          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RALSO (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia solanacearum GN=hisB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.576e-43
Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R  EV R T ET + V +++DG+G    +T +PFLDHMLDQ+A HG+ D+ V ATGD HIDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     +VG+++  L    F+  VN +G+   I  L G N+ H IE   KAF
Sbjct:    3 RRAEVTRNTSETQIRVALDLDGTGKQTLNTGVPFLDHMLDQIARHGMVDLDVTATGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIVRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQIETVFKAF 171          

HSP 2 Score: 31.9574 bits (71), Expect = 9.576e-43
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A ++ PR  G IP+ KG
Sbjct:  169 KAFGRALRMAVEIDPRAAGTIPSTKG 194          
The following BLAST results are available for this feature:
BLAST of DY259991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_MOOTA5.842e-4348.17Imidazoleglycerol-phosphate dehydratase OS=Moorell... [more]
HIS7_ACIAD5.842e-4350.30Imidazoleglycerol-phosphate dehydratase OS=Acineto... [more]
HIS7_JANMA7.346e-4346.75Imidazoleglycerol-phosphate dehydratase OS=Janthin... [more]
HIS7_NITEC7.349e-4348.52Imidazoleglycerol-phosphate dehydratase OS=Nitroso... [more]
HIS7_GEOUR7.630e-4349.39Imidazoleglycerol-phosphate dehydratase OS=Geobact... [more]
HIS7_VEREI9.562e-4347.83Imidazoleglycerol-phosphate dehydratase OS=Vermine... [more]
HIS7_RHIL39.570e-4345.29Imidazoleglycerol-phosphate dehydratase OS=Rhizobi... [more]
HIS7_NITOC9.573e-4349.70Imidazoleglycerol-phosphate dehydratase OS=Nitroso... [more]
HIS7_HERAR9.573e-4345.09Imidazoleglycerol-phosphate dehydratase OS=Hermini... [more]
HIS7_RALSO9.576e-4347.93Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259991 ID=DY259991; Name=DY259991; organism=Citrus clementina; type=EST; length=917bp
GCTGCGTTTTGGCATATAGCCGTGTTGGCGTTGCTACTCTCTCTGCGACA
TTGGAAACGATAGTGTGTAAAATGGAGCTCTCGGTCCCAGCTCGCCTTGT
TCACCTTTCAATCTCGTCCACGTCCTCACGCCGGCTCCTCGTTAAACCAA
AAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCACACAATACTGCTCC
TCAACGCGCCGCATGAACTCCCTCACAACACCACGCGCCTCTCTAAACCC
AGACGGCGACAGCAAACACAACAACGGGTCCGCCTCAACTTCCTCTGCCG
TCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCACGAAAGAGACCAAC
GTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTGCTGATTCATCCAC
TTGCATTCCCTTCCTAGATCACATGCTTGATCAACTGGCTTCGCACGGGC
TATTTGATGTGCACGTGAGGGCAACCGGAGACATTCACATTGATGATCAT
CATACCAATGAAGACGTTGGGCTTGCCATTGGCACGGCATTGCTGCAAGC
TCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGATTTTACAGCTCCTC
TTGATGAAGCTTTGATTCATGTTTCATTGGATTTATCTGGACGGCCACAT
TTAAATTATGATTTGCAAATTCCCACACAGAAAGTTGGAACTTACAACAC
TCAATTGGTGGAACCACTTTTCCAATCCTTGGTGAACACTTCTGGGATGG
ACCCTTCCATTCAACAGCTTGCTGGAAAAAATTCCTCTCACATTATTGAG
GCAACCCTCAAAGCTTTTTGCTAGGGCTCTCCGAAAAGCAACAAAATTAG
GACCCCGTCGCCGTGGAAATATACCCAACCTCAAAGGGGGTTCTCCAACA
TCTTGGAATCTCGACGG
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