DY260005

Overview
NameDY260005
Unique NameDY260005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.064e-26
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL-------------KEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYE 594
            A KR+LKEL+ L KD P    AGP +E+ +F W   I GP D+PYA GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LL + S+L++PN +     +   +++ ++ ++E
Sbjct:    5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.064e-26
Identity = 67/157 (42.68%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  196 SKRILKELKDLQKDPPTSCS------AGPVAEDMFHWQ---ATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL----KEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            S R+ KELK L  DPP   S      A   + D   +    A I GP D+ YA G+F + I  P  YPFQPP V+F T ++HPNI+++G +CLDIL    K  W P+L IS VL  +  LL++PNPDD L+ E++  Y+ ++  ++  AR  T+KYA
Sbjct:    8 SLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.546e-25
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  202 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYAM 630
            RI+KE + L  +P     A P   +  ++   I G S DSP+ GG F   +    +YP   PKV F TK++HPN++    + LDILK++WSPAL I  VLL I +LL  PNPDDPL  ++   +++++A+    AR WT+ YAM
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.019e-25
Identity = 55/146 (37.67%), Postives = 91/146 (62.33%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILK-EQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKY 624
            AS+R++KEL++++K    +     V E ++  WQ  I+ P + PY  G F + I+FP +YPF+PPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+  + +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.019e-25
Identity = 55/146 (37.67%), Postives = 91/146 (62.33%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILK-EQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKY 624
            AS+R++KEL++++K    +     V E ++  WQ  I+ P + PY  G F + I+FP +YPF+PPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+  + +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.019e-25
Identity = 55/146 (37.67%), Postives = 91/146 (62.33%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILK-EQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKY 624
            AS+R++KEL++++K    +     V E ++  WQ  I+ P + PY  G F + I+FP +YPF+PPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+  + +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.637e-25
Identity = 55/146 (37.67%), Postives = 91/146 (62.33%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILK-EQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKY 624
            AS+R++KEL++++K    +     V E ++  WQ  I+ P + PY  G F + I+FP +YPF+PPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+  + +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.444e-25
Identity = 60/147 (40.82%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  202 RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNIN-SNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQS-DKAKYESPARNWTQKYAM 630
            R+ KE K++Q++         + +D  +F W A I GPS++PY GGVF +    P  YP QPP+V F TK+FHPN++   G +CLDILK  WSPA T+  V   I +L+  P PD PL  +   + +S D   + S A+ +T+  AM
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAM 153          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.875e-25
Identity = 57/145 (39.31%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYAMG 633
            +++ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG +C+++LK+ W   L I  VLL I  LL  PNP+  L  E   +   +  +Y S AR  T+ +A G
Sbjct:   14 RQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQG 158          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.875e-25
Identity = 58/145 (40.00%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYAMG 633
            +R+ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG +C+++LK+ W   L I  VLL I  LL  PNP+  L  E   +   +  +Y S AR  T  +A G
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQG 158          
The following BLAST results are available for this feature:
BLAST of DY260005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC7_YEAST9.064e-2638.51Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC37_ARATH9.064e-2642.68Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UE2NL_HUMAN1.546e-2541.67Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UB2L3_MOUSE2.019e-2537.67Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN2.019e-2537.67Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN2.019e-2537.67Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB2L3_PONAB2.637e-2537.67Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBC21_ARATH3.444e-2540.82Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2S_XENTR5.875e-2539.31Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UB2SB_XENLA5.875e-2540.00Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260005 ID=DY260005; Name=DY260005; organism=Citrus clementina; type=EST; length=962bp
ATTTGTGTTGTTTGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGG
GGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCT
ATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGG
TTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAA
GCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTT
GCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATT
ATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCAT
TCATTTTCCTCCTGATTATCCTTTCCAGCCCCCAAAGGTTGCTTTTAGGA
CCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCCTCTGTCTTGAT
ATCCTTAAAGAACAGTGGAGTCCCGCGCTTACCATTTCAAAGGTCCTGCT
CCCTATCTGCTCCTTGCTTACTGATCCCAATCCCGACGACCCTCTTGTAC
CGGAGATTGCCCCCATGTACCAGTCCGACAAGGCCAAATATGAATCCCCC
GCCAGGAACTGGACACAAAAGTATGCCATGGGATGAAGGTTGCTAGAATT
TGCCGAAAAAGGACCACTTATGAAATACGCTGGCTGGGTCGCCACCATTT
CCTTCCCTCGCCTCGGCAGGCCCACCTTGGTCTCCACCTGGCGCCCGCCC
CCACCTCCCCCGCCGGGACCCTCTCCACTTTCAGTTGACTGCCTGCGCTC
CCCCCTCTCTCTCCGCCACCCCCCGCCGCCTCCCAAACCTCAATCCCCCA
CTCCCTTCATAAAATCCCACCCCCAACCCCTCCCCCCCCCCGCCCCCCAA
CCCACCCTCCCCACCCCACCACCCCCTCCCCTGCCCTGCACCCCCACCCA
CCCCCCATCCCC
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