DY260005

Overview
NameDY260005
Unique NameDY260005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.224e-23
Identity = 57/143 (39.86%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            ++++KEL+D++  PP          D+   QA I GP+ +PYA GVF V +    D+P  PPK  F TK+FHPN+ SNG +C++ LK+ W P L I  +LL I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.224e-23
Identity = 55/143 (38.46%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  205 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYAMG 633
            + KE+  L  DPP      P  ED+     +I GP  +PYAGGVF + +    D+P  PP+  F TK+FHPN+   G +C+++LK  W   L +  VLL I  LL  PNP+  L  E   +   D  +Y S A   T+ +AMG
Sbjct:   16 VYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMG 158          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 5.499e-23
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  211 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL-------------KEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDK 582
            ++L +L K+P    SAG + + D++ W+  I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++ + S+L DPN D P   + A  ++ D+
Sbjct:   12 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 5.499e-23
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  211 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL-------------KEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDK 582
            ++L +L K+P    SAG + + D++ W+  I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++ + S+L DPN D P   + A  ++ D+
Sbjct:   12 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 5.499e-23
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  211 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL-------------KEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDK 582
            ++L +L K+P    SAG + + D++ W+  I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++ + S+L DPN D P   + A  ++ D+
Sbjct:   12 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.182e-23
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            ++++KEL+D++  PP          D+   QA I GP+ +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG +C++ LK+ W P L I  +LL I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.380e-23
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            K++ +E+  L  DPP         ED+   QA+I GP+ +PY GG+F + +    D+P  PPK  F TK+FHPN+  NG +C++ LK+ W P L I +VLL +  LL  PNP+  L  E   +       Y   A+ +T+ +A
Sbjct:   17 KQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHA 159          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.380e-23
Identity = 55/147 (37.41%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL-------------KEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKY 591
            AS  + K+LKDL K P    SAG V E ++F W  +IMGP D+ Y GG F   + FP +YP  PP V F ++++HPN+ S+G +C+ IL              E+W+P  T+  ++L I S+L+ PN + P   E A  ++ ++A++
Sbjct:    6 ASLLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEF 152          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.380e-23
Identity = 49/138 (35.51%), Postives = 81/138 (58.70%), Query Frame = 1
Query:  211 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKE-------------QWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDK 582
            ++L +L K+P    SAG + + D++ W+  I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL E             +W P  T+  +++ + S+L DPN D P   + A  ++ D+
Sbjct:   12 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.225e-22
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            +++++EL++++  PP          D+   QA I GP+ +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG +C++ LK+ W P L I  +LL I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
The following BLAST results are available for this feature:
BLAST of DY260005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBE2S_DROVI3.224e-2339.86Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBE2S_DANRE3.224e-2338.46Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UB2G1_RAT5.499e-2335.51Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE5.499e-2335.51Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN5.499e-2335.51Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBE2S_DROMO7.182e-2338.46Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBE2S_NEMVE9.380e-2337.06Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBC14_ARATH9.380e-2337.41Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UB2G1_MACFA9.380e-2335.51Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBE2S_DROSI1.225e-2237.06Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260005 ID=DY260005; Name=DY260005; organism=Citrus clementina; type=EST; length=962bp
ATTTGTGTTGTTTGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGG
GGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCT
ATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGG
TTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAA
GCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTT
GCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATT
ATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCAT
TCATTTTCCTCCTGATTATCCTTTCCAGCCCCCAAAGGTTGCTTTTAGGA
CCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCCTCTGTCTTGAT
ATCCTTAAAGAACAGTGGAGTCCCGCGCTTACCATTTCAAAGGTCCTGCT
CCCTATCTGCTCCTTGCTTACTGATCCCAATCCCGACGACCCTCTTGTAC
CGGAGATTGCCCCCATGTACCAGTCCGACAAGGCCAAATATGAATCCCCC
GCCAGGAACTGGACACAAAAGTATGCCATGGGATGAAGGTTGCTAGAATT
TGCCGAAAAAGGACCACTTATGAAATACGCTGGCTGGGTCGCCACCATTT
CCTTCCCTCGCCTCGGCAGGCCCACCTTGGTCTCCACCTGGCGCCCGCCC
CCACCTCCCCCGCCGGGACCCTCTCCACTTTCAGTTGACTGCCTGCGCTC
CCCCCTCTCTCTCCGCCACCCCCCGCCGCCTCCCAAACCTCAATCCCCCA
CTCCCTTCATAAAATCCCACCCCCAACCCCTCCCCCCCCCCGCCCCCCAA
CCCACCCTCCCCACCCCACCACCCCCTCCCCTGCCCTGCACCCCCACCCA
CCCCCCATCCCC
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