DY260005

Overview
NameDY260005
Unique NameDY260005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.073e-18
Identity = 46/134 (34.33%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYE 594
            A  R+ K+L +L   P T  +  P AED+ +++ T+  P +  Y GG F  + +  P++P +PPKV    KV+HPNI+  G++CL+IL+E W P L+++ V++ +  L  +PN  DPL  + A    +++ +++
Sbjct:   25 AQLRVQKDLSELSL-PSTMKTHFPSAEDIMNFELTVR-PDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFK 156          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.078e-18
Identity = 49/152 (32.24%), Postives = 83/152 (54.61%), Query Frame = 1
Query:  190 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQ--WSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKY 624
            ++S R+ +E K+ ++D P    A P        +++ W   I G + + + GGV+ + + F  DYP +PPK  F    FHPN+  +G++CL IL E+  W P++TI  VLL I  LL +PNP  P       ++ ++K +Y+   +  ++ Y
Sbjct:    4 ISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVY 155          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 4.078e-18
Identity = 49/150 (32.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  187 VMASKRILKELKDLQKD-PPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL-KEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYAM 630
            +MASKR+ KEL+ L K+ PP          ++  W   ++ P   PY    F V I FP +YPF+PP + F TK++HPN+  +G +CL ++  E W P     +VL  +  L++ PN ++P+  E+A +   +   +   A  +T K+ +
Sbjct:    1 MMASKRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLL-PDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEEFTLKFGV 149          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.956e-18
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYE 594
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + Q+++  +E
Sbjct:   30 AQLRIQKDINELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.085e-18
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  265 VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINS-NGSLCLDILKEQWSP---ALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            V ++M  +     GPS++PY+GG++ V +  P +YP++ P + F  ++FHPNI+  +GS+CLD++ + WSP    + I +V LP   LL  PN  DPL  E A +   +   Y +  R++  +YA
Sbjct:   25 VNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLP--QLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.085e-18
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYE 594
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + Q+++  +E
Sbjct:   30 AQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.187e-17
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYE 594
            A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + Q+++  +E
Sbjct:   30 AQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.187e-17
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYE 594
            A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + Q+++  +E
Sbjct:   30 AQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.187e-17
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYE 594
            A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + Q+++  +E
Sbjct:   30 AQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.550e-17
Identity = 56/153 (36.60%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  202 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKV-----AFRTKVFHPNINSNGSLCLDIL----KEQWSPALTISKVLLPICSLLTD-PNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYAM 630
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+ I SL+T+ P  ++P   +    +  D   Y    R+ T + A+
Sbjct:   75 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQ--ERHPGDSKNYNECIRHETMRVAV 225          
The following BLAST results are available for this feature:
BLAST of DY260005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC12_YARLI1.073e-1834.33NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC9_DICDI4.078e-1832.24Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UB2L6_MOUSE4.078e-1832.67Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]
UBC12_XENTR6.956e-1835.56NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC8_SCHPO9.085e-1836.00Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC12_XENLA9.085e-1835.56NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE1.187e-1735.07NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN1.187e-1735.07NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN1.187e-1735.07NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBE2Z_DANRE1.550e-1736.60Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260005 ID=DY260005; Name=DY260005; organism=Citrus clementina; type=EST; length=962bp
ATTTGTGTTGTTTGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGG
GGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCT
ATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGG
TTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAA
GCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTT
GCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATT
ATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCAT
TCATTTTCCTCCTGATTATCCTTTCCAGCCCCCAAAGGTTGCTTTTAGGA
CCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCCTCTGTCTTGAT
ATCCTTAAAGAACAGTGGAGTCCCGCGCTTACCATTTCAAAGGTCCTGCT
CCCTATCTGCTCCTTGCTTACTGATCCCAATCCCGACGACCCTCTTGTAC
CGGAGATTGCCCCCATGTACCAGTCCGACAAGGCCAAATATGAATCCCCC
GCCAGGAACTGGACACAAAAGTATGCCATGGGATGAAGGTTGCTAGAATT
TGCCGAAAAAGGACCACTTATGAAATACGCTGGCTGGGTCGCCACCATTT
CCTTCCCTCGCCTCGGCAGGCCCACCTTGGTCTCCACCTGGCGCCCGCCC
CCACCTCCCCCGCCGGGACCCTCTCCACTTTCAGTTGACTGCCTGCGCTC
CCCCCTCTCTCTCCGCCACCCCCCGCCGCCTCCCAAACCTCAATCCCCCA
CTCCCTTCATAAAATCCCACCCCCAACCCCTCCCCCCCCCCGCCCCCCAA
CCCACCCTCCCCACCCCACCACCCCCTCCCCTGCCCTGCACCCCCACCCA
CCCCCCATCCCC
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