DY260005

Overview
NameDY260005
Unique NameDY260005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.512e-15
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  190 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKV-FHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLT 522
            +A  R+ KEL + Q +PPT      V +++  W   + G   + YA   + + + FP  YP + P+V F +    HP+I SNG +CLDIL + WSPA+T++ V + I S+L+
Sbjct:   15 IACNRLQKELSEWQLNPPTGFRH-KVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLS 125          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.199e-15
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  298 IMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPAR 606
            I+ P +  Y  G     + F   YP +PPKV    K+FHPNI+  G++CL+IL+E WSPAL +  ++  +  L  +PNP+DPL  + A +    + ++    R
Sbjct:   67 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.604e-14
Identity = 48/153 (31.37%), Postives = 72/153 (47.06%), Query Frame = 1
Query:  190 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQ------WSPALTISKVLLPICSLLTD-PNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            M  K ++ E+ +L+ + P +C       +  H     + P +  Y GG F   I  P  Y   PPKV   TK++HPNI   G +CL +L+E       W+P  T+  V+  + SL TD  N  DPL  E A  +  DK  +      + ++YA
Sbjct:   32 MRDKLLVTEVAELEANLPWTCKVHFPDPNKLHCFQLTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYA 184          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.095e-14
Identity = 58/194 (29.90%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAG-----------PVAEDMFH-WQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRT----------------------------------KVFHPNINSN-GSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQ-SDKAKYESPARNWTQKYAM 630
            A KR+L+E + + K+     SA            PV+ED F+ W A + GP+D+ Y    + + I  P +YP QPPK  F                                    ++ HPNI  N G +CLDIL+ +W+PA T+S  L  I  LL DP P  PL  ++A + + +D   Y S    +  +Y++
Sbjct:    3 AEKRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEYYVGRYSI 196          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.736e-14
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  301 MGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYES 597
            + P +  Y GG F  ++ F   YP +PP V     ++HPNI+ +G++CL++L+E WSP + +  V+L +  L  +PN  DPL  + A     D  ++E+
Sbjct:   65 ISPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRFET 163          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.573e-14
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 1
Query:  202 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAF-RTKVFHPNINS-NGSLCLDILK-EQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQ-SDKAKYE 594
            RI+KE    LK L  D P +        S  P+ E D+  W+A I GPSD+PY    F + I  P  YP  PPK++F +  + H N+ S  G +CL+ILK E+W+P   +   +  +  LL +P  D PL  +I  + +  D + Y+
Sbjct:   21 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQ 167          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.573e-14
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  307 PSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYES 597
            P    YAGG +   +     YP +PP V    +++HPNI+ +G++CL++L+E W+PAL I  +++ I  L  +PN  DPL  + A     D  ++E+
Sbjct:   67 PDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTLIEDPLRFEN 163          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.094e-14
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILK---EQWSPALTISKVLLPICSLL-TDPN 531
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P DYPF+PP     T   +    +N  +CL I     E W P+ ++   L+ + + + T PN
Sbjct:   12 AVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTP--NGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPN 126          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.959e-14
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  190 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKV-FHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLT 522
            +A+ R+ KE  + Q +PP+      V++++  W   + G   + YA   + + + FP  YP + P+V F+     HP+I SNG +CLD+L + WSPA+ +S + L I S+L+
Sbjct:   15 IATNRLQKEFMEWQTNPPSGFKHR-VSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLS 125          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.358e-13
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVF--HPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLT 522
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF+ P+V F  +    HP++ SNG +CL IL E WSPAL++  V L I S+L+
Sbjct:    6 KRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
The following BLAST results are available for this feature:
BLAST of DY260005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC15_ARATH5.512e-1536.61Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC12_YEAST7.199e-1535.92NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UB2FB_MOUSE1.604e-1431.37NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBCX_PICPA2.095e-1429.90Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UBC12_ASHGO2.736e-1434.34NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBCX_YEAST3.573e-1435.37Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]
UBC12_KLULA3.573e-1435.05NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBC32_ARATH6.094e-1434.19Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UBC17_ARATH7.959e-1433.93Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBE2W_DANRE1.358e-1338.39Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260005 ID=DY260005; Name=DY260005; organism=Citrus clementina; type=EST; length=962bp
ATTTGTGTTGTTTGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGG
GGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCT
ATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGG
TTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAA
GCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTT
GCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATT
ATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCAT
TCATTTTCCTCCTGATTATCCTTTCCAGCCCCCAAAGGTTGCTTTTAGGA
CCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCCTCTGTCTTGAT
ATCCTTAAAGAACAGTGGAGTCCCGCGCTTACCATTTCAAAGGTCCTGCT
CCCTATCTGCTCCTTGCTTACTGATCCCAATCCCGACGACCCTCTTGTAC
CGGAGATTGCCCCCATGTACCAGTCCGACAAGGCCAAATATGAATCCCCC
GCCAGGAACTGGACACAAAAGTATGCCATGGGATGAAGGTTGCTAGAATT
TGCCGAAAAAGGACCACTTATGAAATACGCTGGCTGGGTCGCCACCATTT
CCTTCCCTCGCCTCGGCAGGCCCACCTTGGTCTCCACCTGGCGCCCGCCC
CCACCTCCCCCGCCGGGACCCTCTCCACTTTCAGTTGACTGCCTGCGCTC
CCCCCTCTCTCTCCGCCACCCCCCGCCGCCTCCCAAACCTCAATCCCCCA
CTCCCTTCATAAAATCCCACCCCCAACCCCTCCCCCCCCCCGCCCCCCAA
CCCACCCTCCCCACCCCACCACCCCCTCCCCTGCCCTGCACCCCCACCCA
CCCCCCATCCCC
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