DY260005

Overview
NameDY260005
Unique NameDY260005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.316e-13
Identity = 43/112 (38.39%), Postives = 58/112 (51.79%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTK--VFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLT 522
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF  P+V F  +    HP++ SNG +CL IL E WSPAL++  V L I S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.024e-13
Identity = 43/112 (38.39%), Postives = 58/112 (51.79%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVF--HPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLT 522
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF  P+V F  +    HP++ SNG +CL IL E WSPAL++  V L I S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.950e-13
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  187 VMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCL---DILKEQWSPALTISKVLLPICSLLT 522
            + A+KR+ KE K++  +PP    A P  +++  W   I GP  +PY  G +  T+ FP DYPF PP +   T   +     N  LCL   D   E W+PA ++  +L  + S +T
Sbjct:    4 IQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.159e-13
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCL---DILKEQWSPALTISKVLLPICSLLT 522
            A KR+ KE K + ++PP    A P  E++  W   I GP D+PY GG +  T+ FP DYP++PP +   T   +     N  LCL   D   + W+P  +++ +L  + S +T
Sbjct:    6 AQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.738e-13
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCL---DILKEQWSPALTISKVLLPICSLLT 522
            A KR+ KE K + ++PP    A P  +++  W   I GP+D+PY GG +  T+ FP DYP++PP +   T   +     N  LCL   D   + W+P  ++S +L  + S +T
Sbjct:    6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMT 116          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.560e-12
Identity = 36/115 (31.30%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCL---DILKEQWSPALTISKVLLPICSLLTDPNP 534
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP++PP +   T   +    +   +CL   D   E W+P  ++S +L  + S + D +P
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 120          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.367e-12
Identity = 35/116 (30.17%), Postives = 56/116 (48.28%), Query Frame = 1
Query:  286 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL--------------KEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKY 591
            W        DS YAG +    + FP  YP +PP + F +K+FHPNI  +G +C+ IL              K++W+P   I  +++ I  +L  PN   P   + + MY+ +  +Y
Sbjct:   68 WDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEY 183          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.367e-12
Identity = 36/115 (31.30%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCL---DILKEQWSPALTISKVLLPICSLLTDPNP 534
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP++PP +   T   +    +   +CL   D   E W+P  ++S +L  + S + D +P
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 120          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.450e-12
Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCL---DILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARN 609
            A KR+ KE K + ++PP    A P  +++  W   I GP ++PY  G +  T+ FP DYPF PP +   T   +     N  LCL   D   + W+P+ +++ +L  + S +T           I  M  +D  K +  A++
Sbjct:    6 AYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTDE------SSIGTMESTDSTKRKYAAKS 139          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.167e-11
Identity = 39/112 (34.82%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDIL---KEQWSPALTISKVLLPICSLL 519
            A KR++KE  +L KDP     A P+ +++F W  T+ GP DS + GGV+   I  PP+YP +PP +   T   +        +CL I     E W P+ +I   LL I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
The following BLAST results are available for this feature:
BLAST of DY260005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBE2W_MOUSE2.316e-1338.39Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN3.024e-1338.39Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBC6_KLULA3.950e-1333.91Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_CANGA5.159e-1334.51Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC6_YEAST6.738e-1334.51Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC34_ARATH2.560e-1231.30Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
Y1A1_ENCCU4.367e-1230.17Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC33_ARATH4.367e-1231.30Probable ubiquitin carrier protein E2 33 OS=Arabid... [more]
UBC6_ASHGO7.450e-1229.58Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UB2J1_MOUSE2.167e-1134.82Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260005 ID=DY260005; Name=DY260005; organism=Citrus clementina; type=EST; length=962bp
ATTTGTGTTGTTTGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGG
GGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCT
ATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGG
TTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAA
GCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTT
GCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATT
ATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCAT
TCATTTTCCTCCTGATTATCCTTTCCAGCCCCCAAAGGTTGCTTTTAGGA
CCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCCTCTGTCTTGAT
ATCCTTAAAGAACAGTGGAGTCCCGCGCTTACCATTTCAAAGGTCCTGCT
CCCTATCTGCTCCTTGCTTACTGATCCCAATCCCGACGACCCTCTTGTAC
CGGAGATTGCCCCCATGTACCAGTCCGACAAGGCCAAATATGAATCCCCC
GCCAGGAACTGGACACAAAAGTATGCCATGGGATGAAGGTTGCTAGAATT
TGCCGAAAAAGGACCACTTATGAAATACGCTGGCTGGGTCGCCACCATTT
CCTTCCCTCGCCTCGGCAGGCCCACCTTGGTCTCCACCTGGCGCCCGCCC
CCACCTCCCCCGCCGGGACCCTCTCCACTTTCAGTTGACTGCCTGCGCTC
CCCCCTCTCTCTCCGCCACCCCCCGCCGCCTCCCAAACCTCAATCCCCCA
CTCCCTTCATAAAATCCCACCCCCAACCCCTCCCCCCCCCCGCCCCCCAA
CCCACCCTCCCCACCCCACCACCCCCTCCCCTGCCCTGCACCCCCACCCA
CCCCCCATCCCC
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