DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_ZYMMO (Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis GN=lpd PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 61/215 (28.37%), Postives = 105/215 (48.84%), Query Frame = 1
Query:   37 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP---IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVA----DVVLFATGQAPNTKRLNLKAVGVEV 660
            K DFD  K++ +  +   RL    K LL    V++  G G++ G  ++ V   +G +    AK I+IATG+RA++ P     G+ +  T   AL    +PK+ +V+G G I +EFAS +   G+ V ++      L   D E+ A VA+  + RGI +  ++ ++ L   +EGV       +  V        + A G   N + + L  +G+++
Sbjct:   75 KPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQMLVETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIW-TYHHALKPPAMPKKLLVIGSGAIGIEFASFYADFGAEVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLTPDDEGVTAEIAGADGKVTKERFSHAIVAIGVVANVENIGLDKLGIKL 288          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_HALSA (Dihydrolipoyl dehydrogenase OS=Halobacterium salinarium GN=lpdA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 68/256 (26.56%), Postives = 120/256 (46.88%), Query Frame = 1
Query:   28 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAK--HILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT--DHGE--EIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGLVVMETKPRNPTPGPL 771
            V+   D D  +++  K   + +L G  ++L    GV L EG  +  G +++ V      + S + +  H +++TGSR    P    G +  + S +AL++ ELP   V++GGGYI +E ++++  +G  V ++   +  L  + D++   V +  E  GI+ H          +++G+ V    + GE  E   + VL A G+ P T  LNL AVG+E    G  E   +       V+ +        +  PGP+
Sbjct:   76 VYADPDVDVAEMVDWKDGVVDQLTGGVEKLCKANGVNLIEGRAEFAGSDKLRVVHGGDGQGSETIEYEHAIVSTGSRPIEVPGFDFGDDPVLDSRQALAMAELPSSMVIVGGGYIGMELSTVFAKLGVDVTVVEMLDGILPQYGDDIARPVRQRAEELGIDFHFGLAADSWTDTDDGIVVTAADEDGEETEFETEKVLVAVGRQPVTDTLNLDAVGLEPNDDGRLETDHEARTDVENVFAI-------GDVAPGPM 324          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH3_HALMA (Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marismortui GN=lpdA3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 62/218 (28.44%), Postives = 109/218 (50.00%), Query Frame = 1
Query:   58 KLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAK--HILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT---------DHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            +++  K   + +L    ++L + AGV L +G  +    N+V +      + S S K  + +IATGSR    P  G   E  ++SD AL+ + +P   V++G GYI +E A+++  +GS V ++   E  L  +++++ ++V +  E  G++ H   T      S +G  V+T         D   E+ AD +L A G+ P T  L++   GVE  + G
Sbjct:   86 EMINWKDGVVDQLTSGIEQLCTAAGVNLLKGTAEFADENKVRIIHQGEGQGSESLKFENCIIATGSRPIEIPGFGFEDERIVSSDGALNFDTVPDELVIVGAGYIGMELATVYSRLGSDVSVIEMLEQALPSYEEDIASIVRKRAERLGVDFHFGYTADSWAAS-DGKAVLTAVPADEAAHDSDIELTADRILVAVGRRPVTDTLSIDDAGVETNAQG 302          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: IRC15_YEAST (Increased recombination centers protein 15 OS=Saccharomyces cerevisiae GN=IRC15 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 60/217 (27.65%), Postives = 103/217 (47.47%), Query Frame = 1
Query:   46 FDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN--LHPRTTIKE---------LIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVE 657
            FD +         I  L  +YKR LS   V +Y+G      P+ VE+ Q         AK+I++ATGS   + P      +  I+SD+ALSL+ +P R  ++GGG I +E A I+  +GS V ++  +    +  D+E+ +     L+ +GI   L  R  + E          + ++   K    H      DV++ + G+ P  K L++ ++G++
Sbjct:   95 FDMQAAQSALKHNIEELGNVYKRELSKNNVTVYKGTAAFKDPHHVEIAQRGMKPFIVEAKYIVVATGSAVIQCPGVAIDNDKIISSDKALSLDYIPSRFTIMGGGTIGLEIACIFNNLGSRVTIVESQSEICQNMDNELASATKTLLQCQGIAFLLDTRVQLAEADAAGQLNITLLNKVSKKTYVHH-----CDVLMVSIGRRPLLKGLDISSIGLD 306          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_SHIFL (Dihydrolipoyl dehydrogenase OS=Shigella flexneri GN=lpdA PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 68/219 (31.05%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   37 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVA-----DVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            K D D  K+   K   I +L G    +     VK+  G GK  G N +EV   +G K   +  + +IA GSR  + P IP ++  I  S +AL L+E+P+R +V+GGG I +E  +++  +GS +D++   +  +   D ++  V  + +  +  NL   T +  +   E+G+  +T  G++  A     D VL A G+ PN K L+    GVEV   G
Sbjct:   80 KTDID--KIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENG-KTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRI-SKKFNLMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRG 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_ECOLI (Dihydrolipoyl dehydrogenase OS=Escherichia coli (strain K12) GN=lpdA PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 68/219 (31.05%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   37 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVA-----DVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            K D D  K+   K   I +L G    +     VK+  G GK  G N +EV   +G K   +  + +IA GSR  + P IP ++  I  S +AL L+E+P+R +V+GGG I +E  +++  +GS +D++   +  +   D ++  V  + +  +  NL   T +  +   E+G+  +T  G++  A     D VL A G+ PN K L+    GVEV   G
Sbjct:   80 KTDID--KIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENG-KTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRI-SKKFNLMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRG 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_ECOL6 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O6 GN=lpdA PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 68/219 (31.05%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   37 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVA-----DVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            K D D  K+   K   I +L G    +     VK+  G GK  G N +EV   +G K   +  + +IA GSR  + P IP ++  I  S +AL L+E+P+R +V+GGG I +E  +++  +GS +D++   +  +   D ++  V  + +  +  NL   T +  +   E+G+  +T  G++  A     D VL A G+ PN K L+    GVEV   G
Sbjct:   80 KTDID--KIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENG-KTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRI-SKKFNLMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRG 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_ECO57 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O157:H7 GN=lpdA PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 68/219 (31.05%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   37 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVA-----DVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            K D D  K+   K   I +L G    +     VK+  G GK  G N +EV   +G K   +  + +IA GSR  + P IP ++  I  S +AL L+E+P+R +V+GGG I +E  +++  +GS +D++   +  +   D ++  V  + +  +  NL   T +  +   E+G+  +T  G++  A     D VL A G+ PN K L+    GVEV   G
Sbjct:   80 KTDID--KIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENG-KTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRI-SKKFNLMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRG 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 63/233 (27.04%), Postives = 120/233 (51.50%), Query Frame = 1
Query:   49 DWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG---VKVITDHGEEIVA--DVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            +WK+ + KK    L   G  +++    G  L+  +  ++  N+           +   KH +IATGS+  + P +P ++  I  S +ALSL+ +P R +++GGG I +E A+I+  +GS VD++ R    L   D ++  +  ++++ R   L   T +K + KS++    VK+  ++ +E V   D +L A G++PN   L L+ +G+++  +G  E   +     S +Y +
Sbjct:   88 NWKEKIIKKLTTGLSNMGEKRKVRIVQGKALFNTDHSVLVKNKKN-------DFTIFFKHAIIATGSKPIKIPSLPNEDNRIWNSTDALSLKSIPNRFLIIGGGIIGLEMATIYSALGSKVDIVDRFNAFLPSVDKDITDIYIKSIKKR-FKLLLNTHVKSVEKSKDNDLIVKIAEENSDENVCCYDNILVAIGRSPNVDFLGLEKIGLKLNESGFIEINQQLKTNISHIYAI 312          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR1_CAEEL (Thioredoxin reductase 1 OS=Caenorhabditis elegans GN=trxr-1 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 1.039e-15
Identity = 66/236 (27.97%), Postives = 103/236 (43.64%), Query Frame = 1
Query:    7 ARSYGWEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP--RTTIKEL---------------IKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVE 657
            A+ YGW++ E K++  W  L     D I  LN  Y+  L    V      G+  GP E+  T         +A   LI+TG R +   IPG +E  ITSD+   L   P + + +G  Y+++E A    G G  V ++ R  L LRGFD +M   + +++   G+       T I+++                K  E    + +  EE   + +L A G+   T  + L  +GVE
Sbjct:  243 AKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYTITSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSIL-LRGFDQDMAERIRKHMIAYGMKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEY--NTILMAIGREAVTDDVGLTTIGVE 475          
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
DLDH_ZYMMO6.094e-1628.37Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis G... [more]
DLDH_HALSA6.094e-1626.56Dihydrolipoyl dehydrogenase OS=Halobacterium salin... [more]
DLDH3_HALMA6.094e-1628.44Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marism... [more]
IRC15_YEAST7.959e-1627.65Increased recombination centers protein 15 OS=Sacc... [more]
DLDH_SHIFL7.959e-1631.05Dihydrolipoyl dehydrogenase OS=Shigella flexneri G... [more]
DLDH_ECOLI7.959e-1631.05Dihydrolipoyl dehydrogenase OS=Escherichia coli (s... [more]
DLDH_ECOL67.959e-1631.05Dihydrolipoyl dehydrogenase OS=Escherichia coli O6... [more]
DLDH_ECO577.959e-1631.05Dihydrolipoyl dehydrogenase OS=Escherichia coli O1... [more]
DLDH_BUCAP7.959e-1627.04Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
TRXR1_CAEEL1.039e-1527.97Thioredoxin reductase 1 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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