DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_SALPB (Soluble pyridine nucleotide transhydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G    +  + + +   DGT  + +A+  +IA GSR    P    ++  +      SD  LSL   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSR----PYHPNDVDFSHPRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_SALPA (Soluble pyridine nucleotide transhydrogenase OS=Salmonella paratyphi A GN=sthA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G    +  + + +   DGT  + +A+  +IA GSR    P    ++  +      SD  LSL   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSR----PYHPNDVDFSHPRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_SALG2 (Soluble pyridine nucleotide transhydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G    +  + + +   DGT  + +A+  +IA GSR    P    ++  +      SD  LSL   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSR----PYHPNDVDFSHPRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_SALEP (Soluble pyridine nucleotide transhydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G    +  + + +   DGT  + +A+  +IA GSR    P    ++  +      SD  LSL   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSR----PYHPNDVDFSHPRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_SALCH (Soluble pyridine nucleotide transhydrogenase OS=Salmonella choleraesuis GN=sthA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 50/181 (27.62%), Postives = 89/181 (49.17%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G    +  + + +   DGT  + +A+  +IA GSR                SD  LSL   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSRPYHPSDVDFSHPRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOLC (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFIIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOHS (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFIIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ESCF3 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOUT (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOSM (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_SALPB1.271e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALPA1.271e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALG21.271e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALEP1.271e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALCH1.271e-1327.62Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_ECOLC1.271e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOHS1.271e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ESCF31.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOUT1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOSM1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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