DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOSE (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain SE11) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOLU (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOLI (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12) GN=sthA PE=1 SV=5)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOL6 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O6 GN=sthA PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOL5 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOK1 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O1:K1 / APEC GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECODH (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECOBW (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECO8A (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O8 (strain IAI1) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECO7I (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 51/185 (27.57%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_ECOSE1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOLU1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOLI1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOL61.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOL51.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOK11.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECODH1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOBW1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO8A1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO7I1.660e-1327.57Soluble pyridine nucleotide transhydrogenase OS=Es... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
back to top