DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ECO81 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O81 (strain ED1a) GN=sthA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.306e-13
Identity = 50/185 (27.03%), Postives = 94/185 (50.81%), Query Frame = 1
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      S+  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+E  S G
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSNSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRG 291          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_VIBPA (Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyticus GN=lpd PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 56/215 (26.05%), Postives = 108/215 (50.23%), Query Frame = 1
Query:   49 DWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVA-----DVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            D  K+   K   + +L G    +     V +  G GK  GPN + V + +G     +  + ++A GSR  + P IP ++  I  S +AL L+E+P++ +++GGG I +E  +++  +GS V+++   +  +   D ++  V  + ++ +   L   T +  +   E+G+ V  + G++  A     D VL A G+ PN K ++ +  G+E+   G
Sbjct:   82 DINKIRIWKEKVVNQLTGGLSGMAKMRNVTVVNGYGKFTGPNSILV-EGEGESTVVNFDNAIVAAGSRPIKLPFIPHEDPRIWDSTDALELKEVPEKLLIMGGGIIGLEMGTVYHSLGSKVEVVEMFDQVIPAADKDIVKVYTKRIKDK-FKLMLETKVTAVEAKEDGIYVSME-GKKAPAEAERYDAVLVAIGRVPNGKLIDGEKAGLEIDERG 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ENT38 (Soluble pyridine nucleotide transhydrogenase OS=Enterobacter sp. (strain 638) GN=sthA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 1
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ +G+   V  + + +   DG+  + +A+  +IA GSR                SD  LSL   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      + +   ++GV +    G+++ AD +L+A G+  NT  L L+ +G+   S G
Sbjct:  111 EILQGDAHFVDEHTLALKCHDGSVETITAEKFVIACGSRPYHPDDVDFSHPRVYDSDSILSLHHEPRHVLIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYERIEACDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLTTDSRG 291          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_BUCBP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lpdA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.835e-12
Identity = 57/222 (25.68%), Postives = 110/222 (49.55%), Query Frame = 1
Query:   34 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSY--SAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE-----IVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            EK+D + K++   +   I   +     L     V++  G  K +  N + V    G   SY  S   I+IATGS +++   IP  ++ I  S  A+S+  +PK+ +++GGG I +E A+I+  +GS VD++      L   D ++  +  R++     N+   + + ++++ + G+ V     +       + D++L A G+ PNT  L++  VG++  + G
Sbjct:   78 EKLDINLKEIQCNQKKIIESFSSGISNLARKRNVRIIFGYAKFLDANSIFV---QGEHDSYVVSFNKIVIATGSLSKKLSYIPYDDIRIWNSSFAVSIPSIPKKLLIIGGGIIGLEMATIYSALGSNVDIIDNSHDILPHLDRDVIDIFKRSV-NHDYNIFFNSNVIKIVQEKNGLLVHIAENDNKNKRFELYDIILVAIGRVPNTDMLDISKVGLKTDNNG 295          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: LPDA_MYCTU (NAD(P)H dehydrogenase (quinone) OS=Mycobacterium tuberculosis GN=lpdA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.339e-12
Identity = 56/221 (25.34%), Postives = 97/221 (43.89%), Query Frame = 1
Query:   40 IDFDWKKL------LQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGP------NEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI--PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV 660
            IDFD  K+       + KT    +   I  +LLS  GV++  G G+++        + ++ T  DG+   + A  +L+ATG+  +  P   P  E  +T  +   L+ LP   +V+G G    EF   +  +G  V ++  ++  L   D +   V+  +   RG+ L        + ++  GV V    G  +     L   G  PNT  L L+ VG+++
Sbjct:   74 IDFDDAKISLPQIHARVKTLAAAQSADITAQLLS-MGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQL 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH2_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=bfmBC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.973e-12
Identity = 56/218 (25.69%), Postives = 109/218 (50.00%), Query Frame = 1
Query:   40 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN-------EVEVTQLDGTKLSYSA-KHILIATGSRAQRAPIPGQEL----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTI--KELIKSEEGVKVITDHGEEIV---ADVVLFATGQAPNTKRLNLK 642
            +  +++K+ Q+K   + +L      L+    + +Y G G+I+GP+        + V + +G +      K ++IATGSR +   +PG E+     +TSDEAL +EELP+  +++GGG I +E+AS+    G  V ++   +  L   D E+   +   L+ +GI       +    + K+ + + +  +   E V   A+ +L + G+  N + + L+
Sbjct:   76 VSLNFEKVQQRKQAVVDKLAAGVNHLMKKGKIDVYTGYGRILGPSIFSPLPGTISVERGNGEENDMLIPKQVIIATGSRPRM--LPGLEVDGKSVLTSDEALQMEELPQSIIIVGGGVIGIEWASMLHDFGVKVTVIEYADRILPTEDLEISKEMESLLKKKGIQFITGAKVLPDTMTKTSDDISIQAEKDGETVTYSAEKMLVSIGRQANIEGIGLE 291          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_MYCTU (Probable soluble pyridine nucleotide transhydrogenase OS=Mycobacterium tuberculosis GN=sthA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 50/193 (25.91%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  103 IYKRLLSNAGVKLYEGEGKIVGPNEVEVT-QLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            + +  L    V L  G G+ + P+ + V  Q    K + +  +I+IATG+R  R       +E  + SD  L L+ LP   VV+G G I +E+AS++  +G+ V ++ +++  L   D E+   +  +L    +       +  +     G       G++I A+ V+++ G+   T  L+L   G+EV   G
Sbjct:   98 VVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAALGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLASGKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRG 290          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_MYCTA (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 50/193 (25.91%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  103 IYKRLLSNAGVKLYEGEGKIVGPNEVEVT-QLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            + +  L    V L  G G+ + P+ + V  Q    K + +  +I+IATG+R  R       +E  + SD  L L+ LP   VV+G G I +E+AS++  +G+ V ++ +++  L   D E+   +  +L    +       +  +     G       G++I A+ V+++ G+   T  L+L   G+EV   G
Sbjct:   98 VVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAALGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLASGKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRG 290          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_MYCBT (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 50/193 (25.91%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  103 IYKRLLSNAGVKLYEGEGKIVGPNEVEVT-QLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            + +  L    V L  G G+ + P+ + V  Q    K + +  +I+IATG+R  R       +E  + SD  L L+ LP   VV+G G I +E+AS++  +G+ V ++ +++  L   D E+   +  +L    +       +  +     G       G++I A+ V+++ G+   T  L+L   G+EV   G
Sbjct:   98 VVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAALGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLASGKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRG 290          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_MYCBP (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 50/193 (25.91%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  103 IYKRLLSNAGVKLYEGEGKIVGPNEVEVT-QLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            + +  L    V L  G G+ + P+ + V  Q    K + +  +I+IATG+R  R       +E  + SD  L L+ LP   VV+G G I +E+AS++  +G+ V ++ +++  L   D E+   +  +L    +       +  +     G       G++I A+ V+++ G+   T  L+L   G+EV   G
Sbjct:   98 VVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAALGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLASGKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRG 290          
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_ECO816.306e-1327.03Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
DLDH_VIBPA1.076e-1226.05Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyt... [more]
STHA_ENT381.405e-1227.07Soluble pyridine nucleotide transhydrogenase OS=En... [more]
DLDH_BUCBP1.835e-1225.68Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
LPDA_MYCTU5.339e-1225.34NAD(P)H dehydrogenase (quinone) OS=Mycobacterium t... [more]
DLDH2_BACSU6.973e-1225.69Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
STHA_MYCTU9.106e-1225.91Probable soluble pyridine nucleotide transhydrogen... [more]
STHA_MYCTA9.106e-1225.91Soluble pyridine nucleotide transhydrogenase OS=My... [more]
STHA_MYCBT9.106e-1225.91Soluble pyridine nucleotide transhydrogenase OS=My... [more]
STHA_MYCBP9.106e-1225.91Soluble pyridine nucleotide transhydrogenase OS=My... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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