DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_MYCBO (Probable soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis GN=sthA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 50/193 (25.91%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  103 IYKRLLSNAGVKLYEGEGKIVGPNEVEVT-QLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            + +  L    V L  G G+ + P+ + V  Q    K + +  +I+IATG+R  R       +E  + SD  L L+ LP   VV+G G I +E+AS++  +G+ V ++ +++  L   D E+   +  +L    +       +  +     G       G++I A+ V+++ G+   T  L+L   G+EV   G
Sbjct:   98 VVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAALGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLASGKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRG 290          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: CDR_PYRAB (Coenzyme A disulfide reductase OS=Pyrococcus abyssi GN=PYRAB14120 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 62/201 (30.85%), Postives = 98/201 (48.76%), Query Frame = 1
Query:  178 VEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQEL--AITSD---EALSLEELPKR-----AVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL-VVMETK 744
            V V + DG K SY   +++ A G+  Q   I G +L    T+D   +A+++ E  ++      V++GGGYI +E A  +   G  V ++ R E  L R FD E+  ++   L+ + +NL  +  +  +   +   KV+TD G E  AD+V+ ATG  PN +    + +GV +  TG      K       VY    V ETK
Sbjct:   94 VRVREKDGEK-SYEWDYLVFANGASPQVPAIEGVDLKGVFTADLPPDAVAIREYMEKNRVEDVVIVGGGYIGLEMAEAFVAQGKRVTMIVRGERILRRSFDKEVTDIIEEKLK-QHVNLRLQEIVLRIEGKDRVEKVVTDAG-EYRADLVILATGIKPNIEL--ARQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETK 289          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: CDR_PYRHO (Coenzyme A disulfide reductase OS=Pyrococcus horikoshii GN=PH0572 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 56/186 (30.11%), Postives = 90/186 (48.39%), Query Frame = 1
Query:  196 DGTKLSYSAKHILIATGSRAQRAPIPGQEL--AITSD---EALSLEELPKR-----AVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVY 720
            +G + SY   +++ A G+  Q   I G  L    T+D   +AL++ E  ++      V++GGGYI +E A  +   G  V ++ R E  L R FD E+  ++   L+ + +NL  +    ++   E   KV+TD G E  A++V+ ATG  PN +    K +GV +  TG      K       VY
Sbjct:   98 NGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKIEGEERVEKVVTDAG-EYKAELVILATGIKPNIEL--AKQLGVRIGETGAIWTNEKMQTSVENVY 279          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_HAEIN (Dihydrolipoyl dehydrogenase OS=Haemophilus influenzae GN=lpdA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 50/201 (24.88%), Postives = 95/201 (47.26%), Query Frame = 1
Query:   85 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH---GEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            + +L G    +     V + EG       + +     DG   +    + +IA GSR  + P IP ++  I  S +AL L+E+PK+ +++GGG I +E  +++  +GS V+++   +  +   D ++  +  + +E +   L   T +  +   ++G+ V  +     +    D VL A G+ PN K ++    GVEV   G
Sbjct:   94 VAKLTGGLAGMAKARKVTVVEGLATFTDSHTLVARDRDGNPTTVKFDNAIIAAGSRPVQLPFIPHEDPRIWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKDVVGIYTKQVE-KKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPNGKLIDAGKAGVEVDDRG 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_CHLMU (Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum GN=lpdA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 49/206 (23.79%), Postives = 100/206 (48.54%), Query Frame = 1
Query:   49 DWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELA---ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGV 654
            D+  ++Q+K   +  +      L+ +  + ++ G G ++   EV++  L  T     A+ I++ATGS  +  P +P  + +   + S   L+L+E+P++  ++GGG I  EFAS++  +GS V ++   +  L   + ++   +       GI      ++  +    + V+ +T +G     D VL + G+  NT+ + L   GV
Sbjct:   79 DYPAMVQRKDTVVRSIRDGLNGLIRSNKITVFSGRGSLISSTEVKI--LGETPSVIKAQSIILATGSEPRAFPGVPFSQQSPRILCSTGVLNLKEIPQKMAIIGGGVIGCEFASLFHTLGSEVSVIEASQQILALNNPDISKTMFDKFTRHGIRFMLGASVSSIEDMGDRVR-LTINGNIEEYDYVLVSIGRRLNTENIGLDKAGV 281          
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_MYCBO9.106e-1225.91Probable soluble pyridine nucleotide transhydrogen... [more]
CDR_PYRAB3.460e-1130.85Coenzyme A disulfide reductase OS=Pyrococcus abyss... [more]
CDR_PYRHO4.519e-1130.11Coenzyme A disulfide reductase OS=Pyrococcus horik... [more]
DLDH_HAEIN7.709e-1124.88Dihydrolipoyl dehydrogenase OS=Haemophilus influen... [more]
DLDH_CHLMU7.709e-1123.79Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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