DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH2_ARATH (Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.564e-24
Identity = 72/236 (30.51%), Postives = 118/236 (50.00%), Query Frame = 1
Query:   40 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE-----EIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ D   +L +K   +  L    + L     V   +G GK + P+EV V  +DG  +    KHI++ATGS  +  P     ++  ++S  ALSL E+PK+ +V+G GYI +E  S+W  +GS V ++      +   D E+R    R+LE + +    +T +  +  S +GVK+I +  E      + ADVVL + G+ P T  L+L+ +GVE    G      +     S VY +
Sbjct:  117 VEVDLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGEQTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAI 352          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH1_ARATH (Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.564e-24
Identity = 69/218 (31.65%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   40 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE-----IVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++ D   +L +K + +  L    + L     V   +G GK + PNEV V  +DG       KHI++ATGS  +  P     ++  ++S  ALSL E+PK+ +V+G GYI +E  S+W  +GS V ++      +   D E+R    R+LE + +    +T +  +  S +GVK+  +  E      + ADVVL + G+ P T  L+L+ +GVE    G
Sbjct:  117 VEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQSILEADVVLVSAGRTPFTSGLDLEKIGVETDKAG 334          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_PEA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisum sativum GN=LPD PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24
Identity = 76/237 (32.07%), Postives = 121/237 (51.05%), Query Frame = 1
Query:   40 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD---HGEE--IVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ D   ++ +K   +  L    + L     V   +G GK V P+E+ V  ++G       KHI+IATGS  +  P     ++  ++S  AL+L E+PK+ VV+G GYI +E  S+W  +GS V ++ F  E+ +   D E+R    R+LE +G+    +T +  +  S +GVK+  +    GE+  I ADVVL + G+ P T  LNL  +GVE    G      +     S VY +
Sbjct:  111 VEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI-VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAI 346          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR1_DROME (Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24
Identity = 77/225 (34.22%), Postives = 119/225 (52.89%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI----TDHGEEI--VADVVLFATGQAPNTKRLNLKAVGVEV 660
            A +YGW V EKI  DW KL+Q   + I  +N + +  L +  V+   G G  V  + + + +L   + + +A+  +IA G R +   IPG  E  ITSD+  SL+  P + +V+G GYI +E A   +G+G    ++ R  + LRGFD +M  +VA ++E RGI    +T    + K ++G  ++     + GEE   V D VL+A G+      LNL   GV V
Sbjct:  186 AAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTL-LAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVTV 408          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_MYCGE (Dihydrolipoyl dehydrogenase OS=Mycoplasma genitalium GN=pdhD PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.354e-23
Identity = 66/219 (30.14%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    4 YARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA------ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE--IVADVVLFATGQAPNTKRLN 636
            +A+ YG  ++ +   DWK+LL++K + + +L    K ++  A V+  EGE  ++  N+V+V        +Y+  +I++ATGSR +   +PG E A      I S +AL+LE +PK+ VV+GGG I VEFA ++  +GS V ++   +  L   D ++  ++++ L+ +G+ +    T   ++++E      T +G E  ++ D +L + G+  NT+ L+
Sbjct:   63 HAKDYGITINGQAKLDWKQLLKQKQEVVDKLVAGVKTIIKGAKVESIEGEATVIDKNKVQVNNT-----TYTTNNIIVATGSRPRYLTLPGFEKAQQAGFIIDSTQALALEGVPKKFVVVGGGVIGVEFAFLFASLGSEVTIIQGVDRILEVCDSDVSELISKTLKNKGVQI---ITNAHVVRAENNQLFYTVNGVEQSVIGDKILVSIGRIANTECLD 273          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH1_BACST (Dihydrolipoyl dehydrogenase OS=Bacillus stearothermophilus GN=pdhD PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 70/220 (31.82%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   34 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE---IVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCE 681
            E +  D+ K+ + K   + +L G  + LL    V++ +GE   V  N V V   D  + +Y+ K+ +IATGSR    P        + S  AL+L E+PK  VV+GGGYI +E  + +   G+ V +L      L GF+ +M A++ + L+ +G+ +      K   + E+GV V  +   E   I AD VL   G+ PNT  L L+ +G+++ + G  E
Sbjct:   79 ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQ-TYTFKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIE 297          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH1_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=pdhD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.779e-23
Identity = 76/229 (33.19%), Postives = 119/229 (51.97%), Query Frame = 1
Query:   34 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITD-HGEE--IVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQ 705
            E +  D+ K+ + K   + +L G    LL    V + +GE   V  N V V   + +  +Y+ K+ +IATGSR    P     E  + S  AL+L+E+PK+ VV+GGGYI  E  + +   G+ + +L   +  L GF+ +M ++V R L+ +G + +H     K + +  +GV V  +  GEE  + AD VL   G+ PNT  L L+ VG+E+    T  G  KT  Q
Sbjct:   79 ENVTVDFTKVQEWKASVVNKLTGGVAGLLKGNKVDVVKGEAYFVDSNSVRVMD-ENSAQTYTFKNAIIATGSRPIELPNFKYSERVLNSTGALALKEIPKKLVVIGGGYIGTELGTAYANFGTELVILEGGDEILPGFEKQMSSLVTRRLKKKGNVEIHTNAMAKGVEERPDGVTVTFEVKGEEKTVDADYVLITVGRRPNTDELGLEQVGIEM----TDRGIVKTDKQ 302          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 71/228 (31.14%), Postives = 117/228 (51.32%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTT---IKELIKSEEG-VKVITDHGE-----EIVADVVLFATGQAPNTKRLNLKAVGVEV 660
            A+ YGWE ++++  +W+ + +     I  LN  Y+  L   GV      G+ V  ++++ T   G +  Y+A   +IATG R +   I G +E  ITSD+  SL   P   +V+G  Y+ +E A    G+G  V ++ R  L LRGFD EM   V   LE +G+    + T   +++L K   G +KV+    E     E + + VL A G+   T+++ L+ +GV++
Sbjct:  281 AKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVL-LRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKI 507          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: GSHR_RAT (Glutathione reductase (Fragment) OS=Rattus norvegicus GN=Gsr PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 77/236 (32.63%), Postives = 122/236 (51.69%), Query Frame = 1
Query:   16 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV-GPNEVEVTQLDGTKLSYSAKHILIATG---SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG----INLHPRTTIKELIKSEEGVK---VITDHGEEIV------ADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            YG++ + K  F+W  + +K+   + RLN IY+  L+ + +++  G      GP      +++G K  ++A HILIATG   +      IPG  L ITSD    LE+LP R+V++G GYIAVE A I   +GS   L+ R +  LR FD  + +     LE  G    + +   + +KE+ K+  G++   V    G +         D +L+A G+ PN+K LNL  +G++    G
Sbjct:   27 YGFQ-NCKSKFNWHVIKEKRDAYVSRLNNIYQNNLTKSHIEVIHGYATFRDGPQPT--AEVNGKK--FTAPHILIATGGVPTVPHENQIPGASLGITSDGFFQLEDLPSRSVIVGAGYIAVEIAGILSALGSKTSLMIRHDKVLRSFDSLISSNCTEELENAGGVEVLTVKKFSQVKEVKKTSSGLELHVVTALPGRKPTVTTIPDVDCLLWAIGRDPNSKGLNLNKLGIQTDDKG 257          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR2_HUMAN (Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 2.554e-22
Identity = 70/225 (31.11%), Postives = 115/225 (51.11%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT----DHGEEIVA--DVVLFATGQAPNTKRLNLKAVGVE 657
            A +YGWEV + +  DW+K+ +   + +  LN  ++  L +  VK +  +   V  + V      G ++  SA HI+IATG R +    I G  E  ITSD+   L+E P + +V+G  Y+A+E A    G+G    ++ R  +PLRGFD +M ++V  ++   G           + +  +G   +T      G+E     D VL+A G+ P+T+ LNL+  GV+
Sbjct:  110 APNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMR-SIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVD 333          
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
DLDH2_ARATH3.564e-2430.51Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Ar... [more]
DLDH1_ARATH3.564e-2431.65Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Ar... [more]
DLDH_PEA4.655e-2432.07Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisu... [more]
TRXR1_DROME7.941e-2434.22Thioredoxin reductase 1, mitochondrial OS=Drosophi... [more]
DLDH_MYCGE1.354e-2330.14Dihydrolipoyl dehydrogenase OS=Mycoplasma genitali... [more]
DLDH1_BACST6.722e-2331.82Dihydrolipoyl dehydrogenase OS=Bacillus stearother... [more]
DLDH1_BACSU8.779e-2333.19Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
TRXR3_MOUSE1.956e-2231.14Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GSHR_RAT1.956e-2232.63Glutathione reductase (Fragment) OS=Rattus norvegi... [more]
TRXR2_HUMAN2.554e-2231.11Thioredoxin reductase 2, mitochondrial OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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