DY260012

Overview
NameDY260012
Unique NameDY260012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALPC (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALPB (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALNS (Bifunctional polymyxin resistance protein arnA OS=Salmonella newport (strain SL254) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALHS (Bifunctional polymyxin resistance protein arnA OS=Salmonella heidelberg (strain SL476) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALEP (Bifunctional polymyxin resistance protein arnA OS=Salmonella enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALDC (Bifunctional polymyxin resistance protein arnA OS=Salmonella dublin (strain CT_02021853) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    +     G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V+S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVASRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALA4 (Bifunctional polymyxin resistance protein arnA OS=Salmonella agona (strain SL483) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECOUT (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain UTI89 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLNWEPKIDMQETIDETLDFFLRT 652          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSE (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SE11) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
The following BLAST results are available for this feature:
BLAST of DY260012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_SALPC2.436e-2134.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPB2.436e-2134.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALNS2.436e-2134.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALHS2.436e-2134.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALEP2.436e-2134.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALDC2.436e-2134.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALCH2.436e-2134.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALA42.436e-2134.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOUT2.436e-2133.72Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSE2.436e-2133.72Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YP02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260012 ID=DY260012; Name=DY260012; organism=Citrus clementina; type=EST; length=996bp
CTTTAACTGGATTGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTC
CAAGTGAGGGTGTTCCAAGGGTTCTGGCATGCTTTAGTAACAATCTCCTT
CGCCGTCAACCACTCAAGCTTGTCGACGGTGGCCAATCTCAGAGGACTTT
TATTTACATAAAGGATGCTATTGAAGCTGTTCTATTAATGATTGAAAATC
CAGCAAGGGCCAATGGTCATATTTTCAATGTGGGCAACCCCCACAATGAA
GTTACAGTTCGACAGCTTGCTGAGATGATGACTGAGGTGTATGCAAAGGT
GAGTGGAGAGGCTGCTTTGGAGGAGCCAACAGTTGATGTCAGCTCCAAAG
AATTTTATGGTGAAGGATATGATGATAGTGACAAGAGAATTCCAGACATG
ACCATTATAAATCAACAGCTTGGTTGGAACCCGAAGACATCACTTTGGGA
CTTGCTTGAATCAACCCTTACCTATCAGCACAGGACATATGCGGAGGCCC
ATAAAGCAGGCCGTGGCCAAACCCAGTTGCATCCAGCTGAGGAGATATAC
TGTTCCGATGCTTGTGGCAAACATTTAAATTCCTTTTTCCAGTTAGTCTT
GAATAAATTCGAACGGTTGTTTCAAATACACTCCAACTTCTTTTTTTCCC
CCTCCCCAGTGGTGAGTCATCATACAAAACTACACGTACCTCCAAGAACC
CTCACATCAATGCTTTGAATACCTACCAACACCCTCCACTATACCTTCCT
AACCCCCCTCCCTCACACCCTCCCCCCTCCTACCCAAAACTCTATCGCCC
ACGCCCTGCACCACCTCCCCCTCCCGCGTCGACCCAACTACTCCAGAACA
CACAGCCTCTCTAATCCACAGACCCACACCCCCCCCTCGCGCTTTACCAT
TCCGCCTGCGACACACTAAGCCCCTCTTCACCACCCCCACGTCACCATCC
ACCTCCCCCCTCTCCTACCCCCCACCTTCCGCTACTATCACCTCCC
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