DY260012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECO24 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=arnA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21 Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + ++ L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SHISS (Bifunctional polymyxin resistance protein arnA OS=Shigella sonnei (strain Ss046) GN=arnA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + + L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508 FNW+GPR+D ++ G R + NL+ P+KL+DGGQ +R F I+D IEA+ +I N R +G I N+GNP NE ++++LA ++ + + K P V S+ +YG+GY D R P + + LGW P ++ D +E TL + R+ A +A Sbjct: 491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFP-PFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDIAERA 659
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSM (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=arnA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + + L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL6 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6 GN=arnA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + + L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + + L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECO7I (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + + L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECO5E (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=arnA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + + L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHHCLDWEPKIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECO57 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 GN=arnA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + + L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHHCLDWEPKIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21 Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + + L W PK + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652 The following BLAST results are available for this feature:
BLAST of DY260012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260012 ID=DY260012; Name=DY260012; organism=Citrus clementina; type=EST; length=996bpback to top |