DY260012

Overview
NameDY260012
Unique NameDY260012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_YERPN (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  491 FNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_YERPG (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  491 FNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_YERPE (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  491 FNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_YERPB (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  491 FNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGQIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_YERPA (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  491 FNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_YERP3 (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  491 FNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGQIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 59/173 (34.10%), Postives = 92/173 (53.18%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + L W P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALSV (Bifunctional polymyxin resistance protein arnA OS=Salmonella schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 59/173 (34.10%), Postives = 92/173 (53.18%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + L W P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 59/173 (34.10%), Postives = 92/173 (53.18%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + L W P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 59/173 (34.10%), Postives = 92/173 (53.18%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + L W P  ++ D +E TL +  R+   A +A
Sbjct:  491 FNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659          
The following BLAST results are available for this feature:
BLAST of DY260012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_YERPN2.062e-2035.58Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPG2.062e-2035.58Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPE2.062e-2035.58Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPB2.062e-2035.58Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPA2.062e-2035.58Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERP32.062e-2035.58Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTI2.062e-2034.10Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALSV2.062e-2034.10Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPK2.062e-2034.10Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPA2.062e-2034.10Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YP02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260012 ID=DY260012; Name=DY260012; organism=Citrus clementina; type=EST; length=996bp
CTTTAACTGGATTGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTC
CAAGTGAGGGTGTTCCAAGGGTTCTGGCATGCTTTAGTAACAATCTCCTT
CGCCGTCAACCACTCAAGCTTGTCGACGGTGGCCAATCTCAGAGGACTTT
TATTTACATAAAGGATGCTATTGAAGCTGTTCTATTAATGATTGAAAATC
CAGCAAGGGCCAATGGTCATATTTTCAATGTGGGCAACCCCCACAATGAA
GTTACAGTTCGACAGCTTGCTGAGATGATGACTGAGGTGTATGCAAAGGT
GAGTGGAGAGGCTGCTTTGGAGGAGCCAACAGTTGATGTCAGCTCCAAAG
AATTTTATGGTGAAGGATATGATGATAGTGACAAGAGAATTCCAGACATG
ACCATTATAAATCAACAGCTTGGTTGGAACCCGAAGACATCACTTTGGGA
CTTGCTTGAATCAACCCTTACCTATCAGCACAGGACATATGCGGAGGCCC
ATAAAGCAGGCCGTGGCCAAACCCAGTTGCATCCAGCTGAGGAGATATAC
TGTTCCGATGCTTGTGGCAAACATTTAAATTCCTTTTTCCAGTTAGTCTT
GAATAAATTCGAACGGTTGTTTCAAATACACTCCAACTTCTTTTTTTCCC
CCTCCCCAGTGGTGAGTCATCATACAAAACTACACGTACCTCCAAGAACC
CTCACATCAATGCTTTGAATACCTACCAACACCCTCCACTATACCTTCCT
AACCCCCCTCCCTCACACCCTCCCCCCTCCTACCCAAAACTCTATCGCCC
ACGCCCTGCACCACCTCCCCCTCCCGCGTCGACCCAACTACTCCAGAACA
CACAGCCTCTCTAATCCACAGACCCACACCCCCCCCTCGCGCTTTACCAT
TCCGCCTGCGACACACTAAGCCCCTCTTCACCACCCCCACGTCACCATCC
ACCTCCCCCCTCTCCTACCCCCCACCTTCCGCTACTATCACCTCCC
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