DY260012

Overview
NameDY260012
Unique NameDY260012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.693e-20
Identity = 58/161 (36.02%), Postives = 83/161 (51.55%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D IEA+  +I+N   A NG I N+GNP NE ++RQL E +   +    + G         DV SK FYG GY D   R P +    + L W P   + + + +TL +
Sbjct:  493 FNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIIDNDNDACNGQIINIGNPENEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGTGYQDVAHRKPSIENAKRLLNWEPTVEMSETIGNTLDF 650          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.693e-20
Identity = 62/172 (36.05%), Postives = 88/172 (51.16%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508
            FNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +IEN     NG I N+GNP NE ++RQL E +   +    + G         +V S+ FYG+GY D   R P +    Q +GW P   L + +  TL +  R  A A KA
Sbjct:  493 FNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVADGIEALARIIENRDGCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFREVESQSFYGKGYQDVSHRKPSIDNARQLIGWTPGIELSETIGKTLDFFLRE-AMAEKA 660          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.517e-20
Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEE--PTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P++LVDGG  +R F  I+D IEA+  +IEN   R +G I N+GNP NE +++Q+AE++    AK       +   P      V SK FYG+GY D   R P +    + L W P   + + + +TL +
Sbjct:  493 FNWMGPRLD---SLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKENRCDGQIINIGNPDNEASIQQMAEIL---LAKFEAHPLRDHFPPFAGFKLVESKSFYGDGYQDVSHRRPSIANARRLLDWEPTIEMEETIGNTLDF 650          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20
Identity = 59/179 (32.96%), Postives = 89/179 (49.72%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD----------VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHK 505
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I +AIEA+  +IEN     +G I N+G+P NE +++ +AE + E +         E P  D          V S+ FYG+GY D   R P +    + L W P   +   +E TL +  +T  E  K
Sbjct:  493 FNWMGPRLD---SLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQKRCFTDISEAIEALFRVIENKDGLCDGQIINIGSPDNEASIKVMAETLVEKFE--------EHPLRDQFPPFAGYNLVESQSFYGDGYQDVQHRRPSIKNAKKLLNWEPTIMMDQTIEDTLDFFLKTAVEETK 660          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20
Identity = 56/161 (34.78%), Postives = 83/161 (51.55%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D IEA+  +++N     NG I N+GNP NE ++RQL E +   +    + G         DV SK FYG GY D + R P +    + L W P   + + + +TL +
Sbjct:  493 FNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIVDNENDCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGAGYQDVEHRKPSIDNAKRLLNWEPTVEMSETIGNTLDF 650          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.999e-20
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    ++    G  R +     NL+    +KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++RQLAE++   + +  +           DV S  +YG+GY D + R P +    + LGW P   +   ++ TL +
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDISDGIEALFRIIENKDNNCDGQIINIGNPDNEASIRQLAELLLASFERHPLRQHFPPFAGFRDVESSSYYGKGYQDVEHRKPSIRNAKRLLGWAPSVPMAQTIDETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.835e-20
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L +M+   + K         P      V S  +YG+GY D + R P +    + L W P   + + ++ TL +  RT
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENTGNRCDGEIINIGNPDNEASIEELGKMLLASFDKHPLRQHF-PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPTIDMQETIDETLDFFLRT 652          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.336e-19
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    ++    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN     +G I N+GNP NE ++RQLAE++ + +   ++            V S  +YG+GY D + R P +    + L W P   +   +  TL +
Sbjct:  491 FNWMGPRLD---NLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENREGLCDGQIINIGNPTNEASIRQLAEILLDSFEDHELRDHFPPFAGFKKVESGSYYGKGYQDVEHRKPSIKNAERLLDWKPTIDMKQTINETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.280e-19
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D +EA+  +I+N     NG I N+GNP NE ++RQL E +   +    +           DV SK FYG GY D + R P +    + L W P   + + + +TL +
Sbjct:  493 FNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEALARIIDNDNDVCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRSNFPPFAGFRDVESKAFYGAGYQDVEHRKPSIANAKRLLDWTPTVEMRETIGNTLDF 650          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.079e-19
Identity = 57/165 (34.55%), Postives = 84/165 (50.91%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL +
Sbjct:  492 FNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDF 649          
The following BLAST results are available for this feature:
BLAST of DY260012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_PSEFS2.693e-2036.02Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSE142.693e-2036.05Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERHH3.517e-2035.98Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHESH4.593e-2032.96Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEF54.593e-2034.78Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SODGM5.999e-2034.78Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ESCF37.835e-2033.73Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL1.336e-1934.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF2.280e-1934.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAE5.079e-1934.55Bifunctional polymyxin resistance protein arnA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YP02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260012 ID=DY260012; Name=DY260012; organism=Citrus clementina; type=EST; length=996bp
CTTTAACTGGATTGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTC
CAAGTGAGGGTGTTCCAAGGGTTCTGGCATGCTTTAGTAACAATCTCCTT
CGCCGTCAACCACTCAAGCTTGTCGACGGTGGCCAATCTCAGAGGACTTT
TATTTACATAAAGGATGCTATTGAAGCTGTTCTATTAATGATTGAAAATC
CAGCAAGGGCCAATGGTCATATTTTCAATGTGGGCAACCCCCACAATGAA
GTTACAGTTCGACAGCTTGCTGAGATGATGACTGAGGTGTATGCAAAGGT
GAGTGGAGAGGCTGCTTTGGAGGAGCCAACAGTTGATGTCAGCTCCAAAG
AATTTTATGGTGAAGGATATGATGATAGTGACAAGAGAATTCCAGACATG
ACCATTATAAATCAACAGCTTGGTTGGAACCCGAAGACATCACTTTGGGA
CTTGCTTGAATCAACCCTTACCTATCAGCACAGGACATATGCGGAGGCCC
ATAAAGCAGGCCGTGGCCAAACCCAGTTGCATCCAGCTGAGGAGATATAC
TGTTCCGATGCTTGTGGCAAACATTTAAATTCCTTTTTCCAGTTAGTCTT
GAATAAATTCGAACGGTTGTTTCAAATACACTCCAACTTCTTTTTTTCCC
CCTCCCCAGTGGTGAGTCATCATACAAAACTACACGTACCTCCAAGAACC
CTCACATCAATGCTTTGAATACCTACCAACACCCTCCACTATACCTTCCT
AACCCCCCTCCCTCACACCCTCCCCCCTCCTACCCAAAACTCTATCGCCC
ACGCCCTGCACCACCTCCCCCTCCCGCGTCGACCCAACTACTCCAGAACA
CACAGCCTCTCTAATCCACAGACCCACACCCCCCCCTCGCGCTTTACCAT
TCCGCCTGCGACACACTAAGCCCCTCTTCACCACCCCCACGTCACCATCC
ACCTCCCCCCTCTCCTACCCCCCACCTTCCGCTACTATCACCTCCC
back to top