DY260012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.693e-20 Identity = 58/161 (36.02%), Postives = 83/161 (51.55%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475 FNW+GPR+D +D G R + NL+ P++L DGG+ +R F I D IEA+ +I+N A NG I N+GNP NE ++RQL E + + + G DV SK FYG GY D R P + + L W P + + + +TL + Sbjct: 493 FNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIIDNDNDACNGQIINIGNPENEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGTGYQDVAHRKPSIENAKRLLNWEPTVEMSETIGNTLDF 650
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.693e-20 Identity = 62/172 (36.05%), Postives = 88/172 (51.16%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKA 508 FNW+GPR+D +D G R + +L+ P++LVDGG +R F + D IEA+ +IEN NG I N+GNP NE ++RQL E + + + G +V S+ FYG+GY D R P + Q +GW P L + + TL + R A A KA Sbjct: 493 FNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVADGIEALARIIENRDGCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFREVESQSFYGKGYQDVSHRKPSIDNARQLIGWTPGIELSETIGKTLDFFLRE-AMAEKA 660
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.517e-20 Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEE--PTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475 FNW+GPR+D +D G R + NL+ P++LVDGG +R F I+D IEA+ +IEN R +G I N+GNP NE +++Q+AE++ AK + P V SK FYG+GY D R P + + L W P + + + +TL + Sbjct: 493 FNWMGPRLD---SLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKENRCDGQIINIGNPDNEASIQQMAEIL---LAKFEAHPLRDHFPPFAGFKLVESKSFYGDGYQDVSHRRPSIANARRLLDWEPTIEMEETIGNTLDF 650
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20 Identity = 59/179 (32.96%), Postives = 89/179 (49.72%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD----------VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHK 505 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I +AIEA+ +IEN +G I N+G+P NE +++ +AE + E + E P D V S+ FYG+GY D R P + + L W P + +E TL + +T E K Sbjct: 493 FNWMGPRLD---SLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQKRCFTDISEAIEALFRVIENKDGLCDGQIINIGSPDNEASIKVMAETLVEKFE--------EHPLRDQFPPFAGYNLVESQSFYGDGYQDVQHRRPSIKNAKKLLNWEPTIMMDQTIEDTLDFFLKTAVEETK 660
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20 Identity = 56/161 (34.78%), Postives = 83/161 (51.55%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475 FNW+GPR+D +D G R + NL+ P++L DGG+ +R F I D IEA+ +++N NG I N+GNP NE ++RQL E + + + G DV SK FYG GY D + R P + + L W P + + + +TL + Sbjct: 493 FNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIVDNENDCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGAGYQDVEHRKPSIDNAKRLLNWEPTVEMSETIGNTLDF 650
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.999e-20 Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475 FNW+GPR+D ++ G R + NL+ +KLVDGG +R F I D IEA+ +IEN +G I N+GNP NE ++RQLAE++ + + + DV S +YG+GY D + R P + + LGW P + ++ TL + Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDISDGIEALFRIIENKDNNCDGQIINIGNPDNEASIRQLAELLLASFERHPLRQHFPPFAGFRDVESSSYYGKGYQDVEHRKPSIRNAKRLLGWAPSVPMAQTIDETLDF 648
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 7.835e-20 Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487 FNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L +M+ + K P V S +YG+GY D + R P + + L W P + + ++ TL + RT Sbjct: 491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENTGNRCDGEIINIGNPDNEASIEELGKMLLASFDKHPLRQHF-PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPTIDMQETIDETLDFFLRT 652
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.336e-19 Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475 FNW+GPR+D ++ G R + NL+ P+KLVDGG+ +R F I D IEA+ +IEN +G I N+GNP NE ++RQLAE++ + + ++ V S +YG+GY D + R P + + L W P + + TL + Sbjct: 491 FNWMGPRLD---NLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENREGLCDGQIINIGNPTNEASIRQLAEILLDSFEDHELRDHFPPFAGFKKVESGSYYGKGYQDVEHRKPSIKNAERLLDWKPTIDMKQTINETLDF 648
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.280e-19 Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475 FNW+GPR+D +D G R + NL+ P++L DGG+ +R F I D +EA+ +I+N NG I N+GNP NE ++RQL E + + + DV SK FYG GY D + R P + + L W P + + + +TL + Sbjct: 493 FNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEALARIIDNDNDVCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRSNFPPFAGFRDVESKAFYGAGYQDVEHRKPSIANAKRLLDWTPTVEMRETIGNTLDF 650
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 5.079e-19 Identity = 57/165 (34.55%), Postives = 84/165 (50.91%), Query Frame = 2 Query: 2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475 FNW+GPR+D +D G R + +L+ P++LVDGG +R F + D IEA+ +I+N R +G I N+GNP NE ++RQL E + + A+ A E V S+ FYG+GY D R P + + L W P L + + TL + Sbjct: 492 FNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDF 649 The following BLAST results are available for this feature:
BLAST of DY260012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260012 ID=DY260012; Name=DY260012; organism=Citrus clementina; type=EST; length=996bpback to top |