DY260012

Overview
NameDY260012
Unique NameDY260012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.079e-19
Identity = 57/165 (34.55%), Postives = 84/165 (50.91%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL +
Sbjct:  492 FNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDF 649          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.079e-19
Identity = 57/165 (34.55%), Postives = 84/165 (50.91%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL +
Sbjct:  492 FNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDF 649          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.478e-18
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    ++    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL +
Sbjct:  492 FNWMGPRLD---RLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIENARRLLDWQPAIELRETIGKTLDF 649          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.478e-18
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P++LVDGG  +R F  I+D IEA+  +IEN   R +G I N+G+P NE ++ Q+AE++   +    +            V SK FYG+GY D   R P +    + L W P   + + +  TL +
Sbjct:  493 FNWMGPRLD---SLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKGNRCDGQIINIGSPDNEASILQMAEVLLGKFEAHPLRHHFPPFAGFKRVESKSFYGDGYQDVSHRRPSIKNARRLLDWEPTIEMEETIGKTLDF 650          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.134e-17
Identity = 56/168 (33.33%), Postives = 83/168 (49.40%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEV---------YAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNWIGP +D     +  +    RV      NL+   P+ +V+ G  +R F  I D IEA+  +I+N   + N  I N+GNPHNE T+ QL +++  +         + K SG   L       S   +YGEGY D D+R P++ I  + L W PKT +   L   + +
Sbjct:  490 FNWIGPGLDDFKIAEKQNA---RVTTQIIFNLINGLPVTIVNNGNQKRCFTDIDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKIIINIIYSNNRNYNFPKFSGFNML-------SGTNYYGEGYQDIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINF 647          
The following BLAST results are available for this feature:
BLAST of DY260012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_PSEAB5.079e-1934.55Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA85.079e-1934.55Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA71.478e-1833.94Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERS41.478e-1834.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_WIGBR2.134e-1733.33Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YP02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260012 ID=DY260012; Name=DY260012; organism=Citrus clementina; type=EST; length=996bp
CTTTAACTGGATTGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTC
CAAGTGAGGGTGTTCCAAGGGTTCTGGCATGCTTTAGTAACAATCTCCTT
CGCCGTCAACCACTCAAGCTTGTCGACGGTGGCCAATCTCAGAGGACTTT
TATTTACATAAAGGATGCTATTGAAGCTGTTCTATTAATGATTGAAAATC
CAGCAAGGGCCAATGGTCATATTTTCAATGTGGGCAACCCCCACAATGAA
GTTACAGTTCGACAGCTTGCTGAGATGATGACTGAGGTGTATGCAAAGGT
GAGTGGAGAGGCTGCTTTGGAGGAGCCAACAGTTGATGTCAGCTCCAAAG
AATTTTATGGTGAAGGATATGATGATAGTGACAAGAGAATTCCAGACATG
ACCATTATAAATCAACAGCTTGGTTGGAACCCGAAGACATCACTTTGGGA
CTTGCTTGAATCAACCCTTACCTATCAGCACAGGACATATGCGGAGGCCC
ATAAAGCAGGCCGTGGCCAAACCCAGTTGCATCCAGCTGAGGAGATATAC
TGTTCCGATGCTTGTGGCAAACATTTAAATTCCTTTTTCCAGTTAGTCTT
GAATAAATTCGAACGGTTGTTTCAAATACACTCCAACTTCTTTTTTTCCC
CCTCCCCAGTGGTGAGTCATCATACAAAACTACACGTACCTCCAAGAACC
CTCACATCAATGCTTTGAATACCTACCAACACCCTCCACTATACCTTCCT
AACCCCCCTCCCTCACACCCTCCCCCCTCCTACCCAAAACTCTATCGCCC
ACGCCCTGCACCACCTCCCCCTCCCGCGTCGACCCAACTACTCCAGAACA
CACAGCCTCTCTAATCCACAGACCCACACCCCCCCCTCGCGCTTTACCAT
TCCGCCTGCGACACACTAAGCCCCTCTTCACCACCCCCACGTCACCATCC
ACCTCCCCCCTCTCCTACCCCCCACCTTCCGCTACTATCACCTCCC
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