DY260020

Overview
NameDY260020
Unique NameDY260020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1058
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.829e-20
Identity = 68/192 (35.42%), Postives = 87/192 (45.31%), Query Frame = 3
Query:   99 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWR-DAPGGEYAWGYCFISEISPPSPHCNLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMT 632
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+     REIAAFFA   HETT     +   G+    YC   + +         YPC    KYYGRGP+QL+WNYNY                    ATD   SF++A+WFWMT
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAA--------QYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.609e-18
Identity = 60/177 (33.90%), Postives = 85/177 (48.02%), Query Frame = 3
Query:  102 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWM 629
            CG G   G   D   G     +  I+++E F D +  +    CP + FYT   F+EA  A+P FG    +  R REIAA+FA   HET           +A  YC  S+  P    CN N     +Y+GRGP+QL+WNYNY+                     DP++SF++++WFW+
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPN----KEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.043e-17
Identity = 61/212 (28.77%), Postives = 94/212 (44.34%), Query Frame = 3
Query:   87 GPARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PHC---NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLN 704
            GP    G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++  F N        REIAAFFA   HET                C+I+EI+  +  +C   N  +PC+   KYYGRGP+Q++WN+NY                    A DP +SF++A+WFWM       + H+V++  +  +   +N
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQGFGATIRAIN 248          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.759e-17
Identity = 62/191 (32.46%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  102 CGSGVVCGERDTGHGTDGGELG---------KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PHCNLN---YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWM 629
            C SG   G    G G  GG  G         + +  E F + +  +    C  + FYT  +F+ AA ++  F          REIAAFFA   HET                C+I+EI+  S  +C+ N   +PC+   KYYGRGP+Q++WNYNY                    A DP +SF++A+WFWM
Sbjct:   57 CRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM 232          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.355e-16
Identity = 59/183 (32.24%), Postives = 82/183 (44.81%), Query Frame = 3
Query:  102 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PHCN----LNYPCRGK--YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWM 629
            CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E    REIAA FA   HET               +C+I EI   S  +C+      YPC     Y+GRGPIQL+WN+NY                    + D V+SF++A+W+WM
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of DY260020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_BETVU3.829e-2035.42Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA1.609e-1833.90Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ1.043e-1728.77Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ6.759e-1732.46Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU3.355e-1632.24Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YP18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260020 ID=DY260020; Name=DY260020; organism=Citrus clementina; type=EST; length=1058bp
ATTGATATCCTACATCTGTTGCTTTCCAAATGAGGCTTATTGCCTCCTTA
CTAGTTTTCTCCCCAGTTTTATCTTTCCTACTAGGAGGCCCCGCCCGGAA
TTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGG
ATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTG
CTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTA
TGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTG
GAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCCAACT
GGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGC
TTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCCACTGTA
ATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAA
CTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGG
AGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTAT
CATTCCAGTCAGCCATCTGGTTCTGGATGACCGCACAGCCCCCAAAGCCA
TCCTGCCACGAAGTCCTTACCGACGAATGGAAACCATCAGCCAATGACCT
AAACCCCGGCCGGCTTCCGGGATACCGTCCAACCCACAATATAATCCACC
GGTGGAATTGAATGTGGCCCAAGGTGGAATGACCCTGTACCTAACCGTAT
TGGGTCCTTAACCACTTTCCGGGGGCAAGTTTGGGATTCACCCCGGTTAC
CACCTGAATTGCACCCCCCACCCCCCCTTCGCCCCTATTCCAGGGCCCCA
ACCCATGTGACCCCCCCCCGACCAACCCTTTAATCAAACTACACCCTAAT
AAAAACCCCCCCCTAAAAAAACCTTTCCCTCCTCCCCCCGCGCCGGCGCA
CCCACCCAATTCGTCCCCCCCCTCTTTTGCAAACACACTAAAAAACACCC
GCGGCCCC
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