DY260028

Overview
NameDY260028
Unique NameDY260028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1099
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1396 contig Ccv1_Contig1396:1..1099. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.398e-12
Identity = 32/84 (38.10%), Postives = 55/84 (65.48%), Query Frame = 2
Query:   35 TKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELPQTI 283
            T + VVVDF A+WCGPC  + P   E+A+   +  F+KVDVD+   +++++ + ++PT +F ++GK+ DK +G   K EL + +
Sbjct:   16 TNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELKELL 99          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.398e-12
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = 2
Query:   32 ETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELPQTIAKHL 295
            ++++LV+VDF A WCGPC  I P L E+AK+  N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD V+G+  K  L  TI K+L
Sbjct:   15 QSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.398e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   44 LVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELPQTIAKH 292
            LV+VDF A WCGPC  + P L  LA +LP+V   K+++DE    A  + V ++PT +  K+G  V +VVG K KE L   I KH
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.826e-12
Identity = 41/84 (48.81%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   50 VVDFTASWCGPCPFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELPQTIAKHL 295
            +VDF A+WCGPC  IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.826e-12
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   35 TKQLVVVDFTASWCGPCPFIAPFLAELAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 238
            T Q VV DF A WCGPC  IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   20 TTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.826e-12
Identity = 35/89 (39.33%), Postives = 59/89 (66.29%), Query Frame = 2
Query:   35 TKQLVVVDFTASWCGPCPFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELPQTIAKHL 295
            +++LV+VDF A WCGPC  I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+G+  K  L   + K+L
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.115e-12
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 2
Query:   17 LQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTI 283
            L+ + +  +L+V DF A+WCGPC  +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVG+ +  + + I
Sbjct:   15 LEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.068e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 2
Query:   44 LVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELPQTIAKH 292
            LV++DF A WCGPC  + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K K+ L + I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.068e-12
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   47 VVVDFTASWCGPCPFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHL 295
            VVVDF A WCGPC  + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.068e-12
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   47 VVVDFTASWCGPCPFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHL 295
            VVVDF A WCGPC  + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
The following BLAST results are available for this feature:
BLAST of DY260028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
THIO_MYCGA1.398e-1238.10Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIO_CYAME1.398e-1242.70Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_CHLPN1.398e-1245.24Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO_STAHJ1.826e-1248.81Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_NEUCR1.826e-1253.52Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIO_CYACA1.826e-1239.33Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_ECHGR3.115e-1240.45Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_CHLCV4.068e-1241.67Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIOM_RAT4.068e-1242.86Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE4.068e-1242.86Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YA04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260028 ID=DY260028; Name=DY260028; organism=Citrus clementina; type=EST; length=1099bp
GGCCTGGAACCCTTATCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTG
TTGTTGATTTCACTGCTTCGTGGTGCGGACCATGCCCTTTCATTGCTCCT
TTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGT
TGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCA
TGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTT
GGATCAAAGAAAGAGGAACTGCCGCAGACTATTGCCAAGCATCTGGCAAC
TGCCTCTGCCCAATAAGTTATAACTATCCCTCCTGCCCTTTGGCTTTAGA
GGCTATAGACCCTCCAATATATGCTATCAGTCCGTAATTTACTTATTAAA
GTGGTTATGGGATTGGGTTTGCTTGTGTGGTTGAATATTCCGCAATTTAC
CGGTCCAAGAAACCCCCACCGGGGTCCTTACAAAAAATTTAATTTCAAAT
TTTTGGGTAAAAAAAAAAAAAAAACAAAACCCCCACCTTCCTTCGCCAAA
TCCGGCCTTATAAAAAACCCTCGCTTATCCATTTTGTTCCCCCCAGCAGG
GCCCCCCTCCCCCCACAACAACTCCCTCTTTTCTCACCCCGCTAAAAACC
CCCCAAAAAGAGCCCCAACAACACGGCCCCAAACCCTTTCTCCCGCCACC
CCCGGTGCCCGGCCTCCCAAACTTCCAATTCTACCTGCCAAAAAAAAAAA
ATATATCATTTAGTTACAAAAACCCCCCCGACGCCCTCAAACAACCCTGC
CTTTTTTCCATCCCCGATTTCACACTACCCCCTTTCTTTGAAACCCCCTT
CTCCTGCCCCCGGCGCCAACACCCCCCCCCCGGCCCCCCCCCCGGAGGGC
ACGGCCCCCGGGTTCGCCCCCCCATTCCCCCCCCCCTCCCCCACCCACAA
ACCCTCCTTAAATCCCCCCCCCCCCCACATACGGGCGGCTCCTGCGCCAC
ACCCACCCCCATCCCTCCCCCTCCCACCGGCTCCACGCGTCCACTACACT
CTCTCCTTCTCTTTCCTCACTCATTCTCATCACCACTCCACCTATTCCC
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