DY260029

Overview
NameDY260029
Unique NameDY260029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1093
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.606e-16
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  299 AQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            AQ  GE++ GG DPK++ G  ++V VT+K YWQ ++  + + N  T +C+GGC AIVD+GTSL+ GPT  V E+  AIG + ++  +
Sbjct:  227 AQPGGELLLGGTDPKYYSGDFSWVNVTRKAYWQVHMDSVDVANGLT-LCKGGCEAIVDTGTSLITGPTKEVKELQTAIGAKPLIKGQ 312          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.016e-16
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 2
Query:  296 DAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            + Q  GE++ GG D K++ G+ +Y+ VT+K YWQ ++  + +GN+ T +C+GGC AIVD+GTSLL GP   V E+  AIG   ++  E
Sbjct:  236 EGQPGGELMLGGTDSKYYHGELSYLNVTRKAYWQVHMDQLEVGNELT-LCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGE 322          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.016e-16
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  296 DAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----EGVVSAECKLV 571
            D +  GE++ GG DPK++ G   YVPVT++ YWQ ++  + IG+Q T +C+ GC AIVD+GTSL+ GP   V  +  AIG     +G    +CK V
Sbjct:  224 DTEPGGELLLGGTDPKYYTGDFNYVPVTRQAYWQIHMDGMSIGSQLT-LCKDGCEAIVDTGTSLITGPPAEVRALQKAIGAIPLIQGEYMIDCKKV 318          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.340e-15
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 2
Query:  296 DAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            +AQ  GE++ GG D K++KG  +Y+ VT+K YWQ ++  + +G+  T +C+GGC AIVD+GTSL+ GP   V E+  AIG   ++  E
Sbjct:  236 NAQPGGELMLGGTDSKYYKGPLSYLNVTRKAYWQVHMEQVDVGSSLT-LCKGGCEAIVDTGTSLIVGPVDEVRELQKAIGAVPLIQGE 322          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.750e-15
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  302 QYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 541
            QY GE++ GGVDP+ + G+ T+ PVT++ YWQ  + +  IGNQ+TG C  GC AIVD+GT LLA P   ++    A G +
Sbjct:  223 QYGGELILGGVDPQLYSGQITWTPVTQEVYWQIGIEEFAIGNQATGWCSQGCQAIVDTGTFLLAVPQQYMSAFLQATGAQ 302          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.986e-15
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  239 VHHRLGDSDEDILPLKNFMDAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            +  +L D D     L     AQ  GE++ GG+D K++KG   Y  VT+K YWQ ++  + +G+  T +C+GGC AIVD+GTSL+ G    V E+  AIG   ++  E
Sbjct:  154 MQQKLVDKDIFSFYLNRDPGAQPGGELMLGGIDSKYYKGSLDYHNVTRKAYWQIHMNQVAVGSSLT-LCKGGCEAIVDTGTSLIVGQPEEVRELGKAIGAVPLIQGE 259          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.899e-15
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  296 DAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            D +  GE++ GG DPK++ G   YV VT++ YWQ  +  + +G+Q   +C GGC AIVDSGTSL+ GP+  V  +  AIG   ++  E
Sbjct:  224 DTEPGGELLLGGTDPKYYTGDFNYVNVTRQAYWQIRVDSMAVGDQ-LSLCTGGCEAIVDSGTSLITGPSVEVKALQKAIGAFPLIQGE 310          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.651e-15
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  311 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            GE++ GG D +++ G+ +Y+ VT+K YWQ ++  + +G++ T +C+GGC AIVD+GTSLL GP   V E+  AIG   ++  E
Sbjct:  238 GELMLGGTDSRYYHGELSYLNVTRKAYWQVHMDQLEVGSELT-LCKGGCEAIVDTGTSLLVGPVDEVKELQKAIGAVPLIQGE 319          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.651e-15
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  296 DAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            DAQ  GE++ GG D K++KG  +Y+ VT+K YWQ +L  + + +  T +C+ GC AIVD+GTSL+ GP   V E+  AIG   ++  E
Sbjct:  238 DAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGE 324          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 8.686e-15
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  314 EIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAEC 562
            E+ FGG DP HF G   ++PVTK+GYWQ  L  I +G+ +   C  GC AIVD+GTSL+ GP   + ++  AIG    +G  + +C
Sbjct:  232 ELTFGGYDPSHFSGSLNWIPVTKQGYWQIALDGIQVGD-TVMFCSEGCQAIVDTGTSLITGPPKKIKQLQEAIGATPMDGEYAVDC 316          
The following BLAST results are available for this feature:
BLAST of DY260029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CATD_CHICK4.606e-1644.83Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_MOUSE6.016e-1644.32Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_CLUHA6.016e-1643.75Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CANFA1.340e-1544.32Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
PEPC_MONDO1.750e-1547.50Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]
CATD_PIG2.986e-1539.25Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
CATD_CHIHA3.899e-1543.18Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_RAT6.651e-1543.37Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_HUMAN6.651e-1544.32Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATE_RAT8.686e-1544.19Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YA05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260029 ID=DY260029; Name=DY260029; organism=Citrus clementina; type=EST; length=1093bp
CTTCACTTTACCTTGCTTCCAACTCAGCTTCAGCAGAAAACCAAAGAACA
TCCTGGAGCAGAAACTTCTTCGGTCAGTTTTCTGTTTATGGGTGCTAGCG
TCCTGCTTGCTTCTTCCTGCTTCCTCTAATGGCTTACGGAGAATTGGCTT
GAAGAAGCGGCGTCCAGATCTTCATAGTCTAAATGCTGCAAGAATAACAA
GAAAAGAGCGATATATGGGGGGAGCAGGTGTTAGTGGCGTGCACCATCGT
TTGGGTGATTCAGATGAAGATATTTTGCCTTTGAAGAACTTTATGGATGC
TCAATACTTTGGAGAGATTGTTTTTGGTGGTGTTGATCCAAAGCACTTTA
AAGGGAAGCATACCTATGTTCCTGTTACTAAAAAAGGCTACTGGCAGTTC
AATTTGGGAGATATATTAATTGGGAATCAGTCCACAGGTGTTTGTGAGGG
TGGTTGTGCTGCCATTGTGGACTCAGGAACATCCTTACTAGCCGGTCCAA
CACCTGTTGTGACTGAAATCAATCATGCCATTGGTGGTGAAGGAGTTGTT
AGTGCGGAGTGTAAGCTAGTTGTTTCCCAGTATGGGGATTTAATATGGGA
TCTCTTAGTATCAGGGCTACTACCTGAGAAAGTATGTCAGCAGATTGGTT
TATGTGCTTTCCATGGCGCTGAATATGTGAGTACTGGGATCCAGACCGTG
GTTGAAAAGGAAACGTATCACCCGGGGATAGTGCTGTGTGCCGTGGCTGT
GAAATGACCGTGGTTTCGGGCCCCAATCCCCTAAAACAAAACCCAACAAA
GGAAAAGTCCTCCGTTATAAAATGACCCTCGCAACGCCCGCCAAATCCCA
AGGGAAAATCATTTATGGACGGGGGCCCCCTTCCACCCTGGCCAAAGGTT
CCTCCCCCCCCGAAAACAAATTTTCCCCCCCCCCCCCAACCCTTAATTCC
GAAACCCCGAAAAGGGATGCCAAATTCCCCCCTCTGGGCTTCCGGGCCTT
CCCCCCCCCCCCCCCCCGGGGGCCCCCCGGGGATCCGGGGGAAGTGTTTC
CCGGGGGGGTTTCCCCCCCCGTTTCCCCCCCCGGGGGAACCCC
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