DY260029

Overview
NameDY260029
Unique NameDY260029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1093
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.686e-15
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  314 EIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAECK 565
            E+ FGG D  HF G   +VPVTK+GYWQ  L +I +G  S   C  GC AIVD+GTSL+ GP+  + ++  AIG    +G  + EC+
Sbjct:  230 ELTFGGYDSSHFSGSLNWVPVTKQGYWQIALDEIQVGG-SPMFCPEGCQAIVDTGTSLITGPSDKIIQLQAAIGATPMDGEYAVECE 315          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.134e-14
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  311 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG-----GEGVVSAECKLV 571
            GE+ FG +D   + G  TYVP+T + YW+F + D  I  QS G C   C AI DSGTSL+AGP   +T +N  +G     GEGV S +C ++
Sbjct:  215 GELSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSLIAGPMADITALNEKLGAVILNGEGVFS-DCSVI 305          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.482e-14
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  311 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVC-EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 541
            G+IVFGGVD   + G+ T++PVT++ YWQ  + D LIGNQ++G C   GC  IVD+GTSLL  P   + E+   IG +
Sbjct:  226 GQIVFGGVDENLYTGELTWIPVTQELYWQITIDDFLIGNQASGWCSSSGCQGIVDTGTSLLVMPAQYLNELLQTIGAQ 303          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.935e-14
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  299 AQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            AQ   E++ GG D K+++G  TY  VT++ YWQ ++  + +G+  T VC+GGC AIVD+GTSL+ GP   V E++ AIG   ++  E
Sbjct:  212 AQPGEELMLGGTDSKYYRGSLTYHNVTRQAYWQIHMDQLDVGSSLT-VCKGGCEAIVDTGTSLMVGPVDEVRELHKAIGAVPLIQGE 297          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.527e-14
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  281 LKNFMDAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE----GVVSAECKLVVS 577
            L N   +Q  G ++FGGVD   + G+  + PVT++ YWQ  + + LIG Q+TG C+ GC AIVD+GTSLL  P   ++ +  A G +    G ++  C  + S
Sbjct:  214 LSNQQGSQNGGAVIFGGVDNSLYTGQIFWAPVTQELYWQIGVEEFLIGGQATGWCQQGCQAIVDTGTSLLTVPQQFMSALQQATGAQQDQYGQLAVNCNSIQS 316          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.527e-14
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  314 EIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAEC 562
            E++FGG D  HF G   +VPVTK+ YWQ  L +I +G  +   C  GC AIVD+GTSL+ GP+  + ++ +AIG    +G  + EC
Sbjct:  235 ELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVDGEYAVEC 319          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.301e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  311 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEG-GCAAIVDSGTSLLAGPTPVVTEINHAIGGE 541
            G+IVFGGVD   + G+ T+VPVT++ YWQ  + D LIG+Q++G C   GC  IVD+GTSLL  P   ++E+   IG +
Sbjct:  226 GQIVFGGVDKNLYTGEITWVPVTQELYWQITIDDFLIGDQASGWCSSQGCQGIVDTGTSLLVMPAQYLSELLQTIGAQ 303          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.311e-14
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  311 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG---GEGVVSAECKLV 571
            GE+VFGG D   F G+  +VPVT +GYWQ  L ++ I N     C GGC AIVD+GTSL+ GP+  + ++ + IG     G    +C ++
Sbjct:  225 GELVFGGFDASRFSGQLNWVPVTNQGYWQIQLDNVQI-NGEVLFCSGGCQAIVDTGTSLITGPSSDIVQLQNIIGASAANGDYEVDCSVL 313          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 4.311e-14
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  299 AQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 559
            AQ  GE++ GG D K+++G   +  VT++ YWQ ++  + +G+  T VC+GGC AIVD+GTSL+ GP   V E+  AIG   ++  E
Sbjct:  217 AQPGGELMLGGTDSKYYRGSLMFHNVTRQAYWQIHMDQLDVGSSLT-VCKGGCEAIVDTGTSLIVGPVEEVRELQKAIGAVPLIQGE 302          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.354e-14
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  314 EIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAEC 562
            E+ FGG DP HF G   ++PVTK+ YWQ  L  I +G+ +   C  GC AIVD+GTSL+ GP   +  +  AIG    +G  + +C
Sbjct:  231 ELTFGGYDPSHFSGSLNWIPVTKQAYWQIALDGIQVGD-TVMFCSEGCQAIVDTGTSLITGPPDKIKHLQEAIGATPIDGEYAVDC 315          
The following BLAST results are available for this feature:
BLAST of DY260029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CATE_RABIT8.686e-1545.98Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
CATD_DICDI1.134e-1444.57Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
PEPC_MOUSE1.482e-1448.72Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
CATD_SHEEP1.935e-1443.68Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
PEPC_SUNMU2.527e-1438.83Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2[more]
CATE_HUMAN2.527e-1444.19Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
PEPC_RAT3.301e-1448.72Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
CATEA_XENLA4.311e-1442.22Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CATD_BOVIN4.311e-1442.53Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATE_MOUSE7.354e-1443.02Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YA05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260029 ID=DY260029; Name=DY260029; organism=Citrus clementina; type=EST; length=1093bp
CTTCACTTTACCTTGCTTCCAACTCAGCTTCAGCAGAAAACCAAAGAACA
TCCTGGAGCAGAAACTTCTTCGGTCAGTTTTCTGTTTATGGGTGCTAGCG
TCCTGCTTGCTTCTTCCTGCTTCCTCTAATGGCTTACGGAGAATTGGCTT
GAAGAAGCGGCGTCCAGATCTTCATAGTCTAAATGCTGCAAGAATAACAA
GAAAAGAGCGATATATGGGGGGAGCAGGTGTTAGTGGCGTGCACCATCGT
TTGGGTGATTCAGATGAAGATATTTTGCCTTTGAAGAACTTTATGGATGC
TCAATACTTTGGAGAGATTGTTTTTGGTGGTGTTGATCCAAAGCACTTTA
AAGGGAAGCATACCTATGTTCCTGTTACTAAAAAAGGCTACTGGCAGTTC
AATTTGGGAGATATATTAATTGGGAATCAGTCCACAGGTGTTTGTGAGGG
TGGTTGTGCTGCCATTGTGGACTCAGGAACATCCTTACTAGCCGGTCCAA
CACCTGTTGTGACTGAAATCAATCATGCCATTGGTGGTGAAGGAGTTGTT
AGTGCGGAGTGTAAGCTAGTTGTTTCCCAGTATGGGGATTTAATATGGGA
TCTCTTAGTATCAGGGCTACTACCTGAGAAAGTATGTCAGCAGATTGGTT
TATGTGCTTTCCATGGCGCTGAATATGTGAGTACTGGGATCCAGACCGTG
GTTGAAAAGGAAACGTATCACCCGGGGATAGTGCTGTGTGCCGTGGCTGT
GAAATGACCGTGGTTTCGGGCCCCAATCCCCTAAAACAAAACCCAACAAA
GGAAAAGTCCTCCGTTATAAAATGACCCTCGCAACGCCCGCCAAATCCCA
AGGGAAAATCATTTATGGACGGGGGCCCCCTTCCACCCTGGCCAAAGGTT
CCTCCCCCCCCGAAAACAAATTTTCCCCCCCCCCCCCAACCCTTAATTCC
GAAACCCCGAAAAGGGATGCCAAATTCCCCCCTCTGGGCTTCCGGGCCTT
CCCCCCCCCCCCCCCCCGGGGGCCCCCCGGGGATCCGGGGGAAGTGTTTC
CCGGGGGGGTTTCCCCCCCCGTTTCCCCCCCCGGGGGAACCCC
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