DY260029

Overview
NameDY260029
Unique NameDY260029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1093
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.354e-14
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  314 EIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 535
            E+ FGG DP HF G   +VPVTK+ YWQ  L  I +G+ S   C  GC AIVD+GTSL+ GP   + ++  A+G
Sbjct:  225 ELTFGGYDPSHFSGSLNWVPVTKQAYWQIALDGIQVGD-SVMFCSEGCQAIVDTGTSLITGPPGKIKQLQEALG 297          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.604e-14
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  311 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQ 580
            GE+V GG DP H+    T+VPVT   YWQ ++  + +G   T +C  GCAAI+D+GTSL+ GPT  +  ++ AIGG  +++ E  ++ S+
Sbjct:  231 GELVLGGSDPAHYIPPLTFVPVTVPAYWQIHMERVKVGPGLT-LCAKGCAAILDTGTSLITGPTEEIRALHAAIGGIPLLAGEYIILCSE 319          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.604e-14
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  311 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 535
            GE+VFGG D   F G+  +VPVT +GYWQ  L +I I N     C GGC AIVD+GTS++ GP+  + ++   IG
Sbjct:  225 GELVFGGFDASRFSGQLNWVPVTNQGYWQIQLDNIQI-NGEVVFCSGGCQAIVDTGTSMITGPSSDIVQLQSIIG 298          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPE_CHICK (Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.638e-13
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  317 IVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE----GVVSAECKLVVS 577
            +VFGG+D  +F G   ++PV+ +GYWQ ++  I++  Q    C  GC AI+D+GTSL+AGP   + +I  A+G      G  S  C  +++
Sbjct:  226 VVFGGIDESYFTGSINWIPVSYQGYWQISMDSIIVNKQEI-ACSSGCQAIIDTGTSLVAGPASDINDIQSAVGANQNTYGEYSVNCSHILA 315          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.140e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  317 IVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG----GEGVVSAECKLV 571
            ++FGG+D  ++ G   +VP++ +GYWQ  +  I +  QS   C GGC AIVD+GTSLL+GPT  +  I   IG     +G ++  C  +
Sbjct:  226 VMFGGIDSSYYTGSLNWVPLSSEGYWQITVDSITMNGQSIA-CNGGCQAIVDTGTSLLSGPTNAIANIQSKIGASQNSQGQMAVSCSSI 313          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPC_RHIFE (Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.794e-13
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  281 LKNFMDAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 541
            L N   +Q  G ++FGGVD   ++G+  + PVT++ YWQ  + + LIG Q++G C  GC AIVD+GTSLL  P   ++ +  A G +
Sbjct:  214 LSNQQGSQNGGAVIFGGVDNSLYQGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSQGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 300          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.650e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  281 LKNFMDAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 541
            L N   ++  G +VFGGVD   + G+  + PVT++ YWQ  +   LIG Q+TG C  GC AIVD+GTSLL  P   ++ +  A G +
Sbjct:  214 LSNQQSSKDGGAVVFGGVDNSLYTGQIFWTPVTQELYWQIGVEQFLIGGQATGWCSQGCQAIVDTGTSLLTVPQQYLSALQQATGAQ 300          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.225e-13
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  266 EDILPLKNFMDAQYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVSQYGDLIWDL 604
            +D+  +    D Q    ++FGG+D  ++ G   +VPV+ +GYWQ ++  I + N  T  C  GC AIVD+GTSLL GPT  +  I   IG      GE VVS      +S   D+++ +
Sbjct:  210 QDLFSVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITM-NGKTIACAKGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGEMVVSCS---AISSLPDIVFTI 324          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.225e-13
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  311 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 538
            GE+V GG DP H+    T++PVT   YWQ ++  + +G     +C  GC+AI+D+GTSL+ GP+  +  +N AIGG
Sbjct:  226 GELVLGGSDPAHYVPPLTFIPVTIPAYWQVHMESVKVGT-GLSLCAQGCSAILDTGTSLITGPSEEIRALNKAIGG 300          
BLAST of DY260029 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.130e-13
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  302 QYFGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 541
            +Y GE++ GGVD + + G+  + PVT++ YWQ  + + LIGNQ+TG+C  GC  IVD+GT  L  P   +     A G +
Sbjct:  222 EYGGELILGGVDTQFYSGEIVWAPVTREMYWQVAIDEFLIGNQATGLCSQGCQGIVDTGTFPLTVPQQYLDSFVKATGAQ 301          
The following BLAST results are available for this feature:
BLAST of DY260029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CATE_CAVPO7.354e-1448.65Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]
NAPSA_HUMAN9.604e-1442.22Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATEB_XENLA9.604e-1448.00Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
PEPE_CHICK1.638e-1337.36Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1[more]
PEPA_SORUN2.140e-1339.33Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]
PEPC_RHIFE2.794e-1341.38Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=... [more]
PEPC_SORUN3.650e-1342.53Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1[more]
PEPA4_MACFU6.225e-1336.13Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
NAPSA_MOUSE6.225e-1343.42Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
PEPB_CANFA8.130e-1341.25Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YA05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260029 ID=DY260029; Name=DY260029; organism=Citrus clementina; type=EST; length=1093bp
CTTCACTTTACCTTGCTTCCAACTCAGCTTCAGCAGAAAACCAAAGAACA
TCCTGGAGCAGAAACTTCTTCGGTCAGTTTTCTGTTTATGGGTGCTAGCG
TCCTGCTTGCTTCTTCCTGCTTCCTCTAATGGCTTACGGAGAATTGGCTT
GAAGAAGCGGCGTCCAGATCTTCATAGTCTAAATGCTGCAAGAATAACAA
GAAAAGAGCGATATATGGGGGGAGCAGGTGTTAGTGGCGTGCACCATCGT
TTGGGTGATTCAGATGAAGATATTTTGCCTTTGAAGAACTTTATGGATGC
TCAATACTTTGGAGAGATTGTTTTTGGTGGTGTTGATCCAAAGCACTTTA
AAGGGAAGCATACCTATGTTCCTGTTACTAAAAAAGGCTACTGGCAGTTC
AATTTGGGAGATATATTAATTGGGAATCAGTCCACAGGTGTTTGTGAGGG
TGGTTGTGCTGCCATTGTGGACTCAGGAACATCCTTACTAGCCGGTCCAA
CACCTGTTGTGACTGAAATCAATCATGCCATTGGTGGTGAAGGAGTTGTT
AGTGCGGAGTGTAAGCTAGTTGTTTCCCAGTATGGGGATTTAATATGGGA
TCTCTTAGTATCAGGGCTACTACCTGAGAAAGTATGTCAGCAGATTGGTT
TATGTGCTTTCCATGGCGCTGAATATGTGAGTACTGGGATCCAGACCGTG
GTTGAAAAGGAAACGTATCACCCGGGGATAGTGCTGTGTGCCGTGGCTGT
GAAATGACCGTGGTTTCGGGCCCCAATCCCCTAAAACAAAACCCAACAAA
GGAAAAGTCCTCCGTTATAAAATGACCCTCGCAACGCCCGCCAAATCCCA
AGGGAAAATCATTTATGGACGGGGGCCCCCTTCCACCCTGGCCAAAGGTT
CCTCCCCCCCCGAAAACAAATTTTCCCCCCCCCCCCCAACCCTTAATTCC
GAAACCCCGAAAAGGGATGCCAAATTCCCCCCTCTGGGCTTCCGGGCCTT
CCCCCCCCCCCCCCCCCGGGGGCCCCCCGGGGATCCGGGGGAAGTGTTTC
CCGGGGGGGTTTCCCCCCCCGTTTCCCCCCCCGGGGGAACCCC
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