DY260033

Overview
NameDY260033
Unique NameDY260033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1003
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260033 vs. ExPASy Swiss-Prot
Match: XIP1_WHEAT (Xylanase inhibitor protein 1 OS=Triticum aestivum GN=XIPI PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.953e-22
Identity = 71/239 (29.71%), Postives = 120/239 (50.21%), Query Frame = 3
Query:   36 LLVTLSLIKASQGPRRIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINPAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSS--RPLGAAVLDGIDFDIEQGSTL-HWDDLARFLSAYSSR---GKKVYLTAAPQCPFPD-RFLGAALNTGLFDYVWVQFYNHPP-CQYSSGNTQNLISSFNRWASSLRNGKLFLG 728
            L +T + + A     ++ ++WG+N  EG+L   C +G Y  V ++FL+ FG      ++ +GH   + G        IK CQS+G+ V                  A ++ D+LWN++ GG+  S  RP G A LDG+D  +E G+    +D LA  L+ ++ R   GK ++LTA  +C +P    +G AL TG+F+ V V+ Y     C  + G       S+++W ++    + ++G
Sbjct:   22 LFLTPTALAAGGKTGQVTVFWGRNKAEGSLREACDSGMYTMVTMSFLDVFGANGKYHLDLSGHDLSSVGA------DIKHCQSKGVPVSLSIGGYGTGYSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVDLFLEHGTPADRYDVLALELAKHNIRGGPGKPLHLTATVRCGYPPAAHVGRALATGIFERVHVRTYESDKWCNQNLG----WEGSWDKWTAAYPATRFYVG 250          
BLAST of DY260033 vs. ExPASy Swiss-Prot
Match: CHI3_CANAL (Chitinase 3 OS=Candida albicans GN=CHT3 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.342e-21
Identity = 78/254 (30.71%), Postives = 119/254 (46.85%), Query Frame = 3
Query:   18 IATFLPLLVTLSLIKASQGPRRIAIYWGQN--GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINPAGHCNPA--AGG---CRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGG---TSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSR--GKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNHPPCQYSSGNTQNLISSFNRWASSLRNGKLFLGPATSS 743
            + T   LL+    I A      +A+YWGQN  G++  L+  C +     V ++F+++F +    ++N A  C     A G   C+ +++ IK CQ++G  ++                 AK  A  LW+ F       ++ RP   AVLDG DFDIE   +  +  LA  L     +   K  YL AAPQCP+PD  +G  L     D+V++QFYN+     SS    +   ++    S  +N KLF+G   SS
Sbjct:    4 LLTIFSLLLPALAINARSNSN-VAVYWGQNSGGSQQRLSYYCDSDAVDIVILSFMHQFPS--PIQLNFANACEGTYTANGILQCQTIAEDIKYCQNKGKTILLSLGGAAGSYGFSDDATAKQFAHTLWDLFGNSKNLATNDRPFYDAVLDGFDFDIENNWSTGYPALATELRTLFQKDTSKNYYLGAAPQCPYPDASVGPLLKQSEIDFVFIQFYNNYCNLGSSSFNWDTWLNYAETDSPNKNIKLFVGVPASS 254          
BLAST of DY260033 vs. ExPASy Swiss-Prot
Match: CHLY_PARTH (Bifunctional chitinase/lysozyme (Fragment) OS=Parthenocissus quinquefolia PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.649e-17
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3
Query:   84 IAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINPA 218
            IAIYWGQNGNEGTLT TC TGKY+YVNIAFLNKFGNGQTPEIN A
Sbjct:    3 IAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLA 47          
BLAST of DY260033 vs. ExPASy Swiss-Prot
Match: YKT4_SCHPO (Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.633e-15
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 3
Query:   93 YWGQN-------GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINPAGHCNPA---AGG----CRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLA-RFLSAYSS-RGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNHPPCQYSSGNTQNLISSFNRW 692
            YWG N        ++  L+S C    Y  + ++ +  F     P  + +  C+ +   +G     C  +   I+ CQ  GIKV+                D  N A  +WN F  G  S RP G AV+DG D ++ +G+   +   A R L  Y+S   +K Y++AAP C  PD  L  A++   FD++ +  +N    +  SG+     S+F+ W
Sbjct:   31 YWGSNLAGKMGDRDQKRLSSYCQNTTYDAIILSSVIDFNVDGWPVYDFSNLCSDSDTFSGSELKKCPQIETDIQVCQENGIKVLLSIGGYNGNFSLNNDDDGTNFAFQVWNIFGSGEDSYRPFGKAVVDGFDLEVNKGTNTAYSAFAKRMLEIYASDPRRKYYISAAPTCMVPDHTLTKAISENSFDFLSIHTFNSSTGEGCSGSRN---STFDAW 243          
The following BLAST results are available for this feature:
BLAST of DY260033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
XIP1_WHEAT4.953e-2229.71Xylanase inhibitor protein 1 OS=Triticum aestivum ... [more]
CHI3_CANAL9.342e-2130.71Chitinase 3 OS=Candida albicans GN=CHT3 PE=3 SV=2[more]
CHLY_PARTH1.649e-1791.11Bifunctional chitinase/lysozyme (Fragment) OS=Part... [more]
YKT4_SCHPO2.633e-1527.78Chitinase-like protein PB1E7.04c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YA10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260033 ID=DY260033; Name=DY260033; organism=Citrus clementina; type=EST; length=1003bp
CCAGAAACTCCCCCGCAATAGCAACCTTCCTCCCCCTGCTGGTCACTCTG
TCATTGATCAAAGCCTCCCAAGGCCCCCGCCGCATCGCAATCTATTGGGG
CCAAAACGGCAACGAGGGTACCCTCACTTCCACCTGTGCCACAGGCAAAT
ATGCTTATGTCAACATAGCTTTCCTGAACAAGTTTGGCAACGGCCAGACC
CCTGAAATTAACCCTGCCGGCCACTGCAACCCCGCAGCCGGTGGCTGCAG
AGTCGTCAGCGACGCAATCAAGAGTTGTCAGAGCCGAGGCATCAAAGTTA
TGCTTTCCCTCGGAGGTGGGGTTGGTAGCTACTCTTTGGCTTCTGTAGCT
GATGCCAAGAATGTAGCTGATTACTTGTGGAACAATTTCTTGGGGGGAAC
ATCAAGTTCAAGGCCATTAGGTGCTGCTGTGTTGGACGGTATTGATTTTG
ATATTGAGCAAGGCTCAACTTTGCATTGGGATGACCTTGCAAGGTTTCTA
TCAGCATATAGCAGCCGTGGCAAGAAAGTTTACTTAACAGCAGCTCCCCA
GTGCCCATTTCCTGATAGGTTTCTGGGTGCTGCTTTGAACACGGGGCTTT
TTGATTATGTATGGGTTCAGTTTTACAACCACCCACCTTGTCAGTATAGT
TCAGGAAATACCCAGAATCTTATAAGTTCATTTAACAGATGGGCTTCATC
ATTGAGAAATGGGAAGTTGTTTTTGGGGCCTGCCACCAGCTCCTGCTGCC
CCAAGCAGCGGGTATATTCCCCCCCAATGGTGTAACTTCCCAGGTACCTT
CCCCGAACAAAACGCCCCCCCAGTAAGGGCGGTGGTCTGCTTTTGTCCAA
AGTTTTTTGATGAACCAAATGGGTACCCTTCCCCCCCTCCAACCAAGTGT
TTTAAACCAATCCCAACCAAAACCCCCCCTTTACCCCCCAGGAAAAGGCC
AAAAAAAATAAAAAAATGGGCAGGCCCTTGCCGGTAATTTCCCAACCCCC
CCC
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