DY260042

Overview
NameDY260042
Unique NameDY260042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length972
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.758e-14
Identity = 62/186 (33.33%), Postives = 92/186 (49.46%), Query Frame = 1
Query:  247 VFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPI--EGETKICATSLESMPDFVHGTFRLETKFQVLSTKFL--AQSPTIFQNYTILQVPKPMVA---PQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRMETVALC 783
            VFF  KDL  G  + ++F +    A    L R  AD++PF+ ++LP +L   S    S  A+ M  TL  CE   +    + K C TSLESM +F   +       + +ST+ +    + T  Q YT+ +  KP+V+     MV C  MPY YA+  C +  T    + V+L G +G R E +A C
Sbjct:   97 VFFLEKDLFPGSKITLHFTRGGACA--MVLLRGRADAIPFASEKLPEILTQLSVPAGSRAAEDMRTTLAECEAALLGARDQAKHCVTSLESMVEFAAASLGTR-DIRAVSTEVIGTGAAETPRQEYTV-EAVKPVVSVSGGNMVTCHGMPYAYAVFGCHT--TTATAYAVTLAGADGTRAEALATC 276          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.296e-11
Identity = 61/194 (31.44%), Postives = 88/194 (45.36%), Query Frame = 1
Query:  250 FFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRM--ETVALCPLETSHWSPKSAPF 825
            FF  K LK G  MP+   K D       LPR  A  LPFS  ++  L + F  ++DS +AK +   L+ CE  P  GETK C  S E M DF   T  L     V +T+    S       +I  +    V  + V+C    YP  + +C S + + +++   +   N K      VA+C ++TS W P+   F
Sbjct:  417 FFREKMLKSGTIMPMPDIK-DKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDF--ATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVT-KSVSCHQTLYPSLLYYCHS-VPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAF 605          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.296e-11
Identity = 61/194 (31.44%), Postives = 88/194 (45.36%), Query Frame = 1
Query:  250 FFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRM--ETVALCPLETSHWSPKSAPF 825
            FF  K LK G  MP+   K D       LPR  A  LPFS  ++  L + F  ++DS +AK +   L+ CE  P  GETK C  S E M DF   T  L     V +T+    S       +I  +    V  + V+C    YP  + +C S + + +++   +   N K      VA+C ++TS W P+   F
Sbjct:  414 FFREKMLKSGTIMPMPDIK-DKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDF--ATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVT-KSVSCHQTLYPSLLYYCHS-VPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAF 602          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.296e-11
Identity = 60/194 (30.93%), Postives = 86/194 (44.33%), Query Frame = 1
Query:  250 FFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRM--ETVALCPLETSHWSPKSAPF 825
            FF  K LK G  MP+   K D       LPR  A  LPFS  ++  L + F   D+S + K +   L+ CE  P  GETK C  S E M DF   T  L     V +T+    S       ++  +    V  + V+C    YPY + +C S + + +++   +   N K      VA+C ++TS W P    F
Sbjct:  415 FFREKMLKSGTIMPMPDIK-DKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDF--ATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVT-KSVSCHQTLYPYLLYYCHS-VPKVRVYEADILDPNSKVKINHGVAICHVDTSSWGPSHGAF 603          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.770e-11
Identity = 62/200 (31.00%), Postives = 85/200 (42.50%), Query Frame = 1
Query:  235 PSTMVFFTLKDLKIGETMPI--YFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPS-PMTENKLFRVSLGGDNGKRMETVALCPLETSHWSPKSAPF 825
            P    FF   +L  G TMP+     K  P A+   LPR+ A  +PF    +    + F    D+ + KA+  T+  CE  P  GETK CATS E + DF      L     V ST   A S    +   +  V    V  + V+C    +PY + +C S P        +     + K    VA+C L+TS WSP    F
Sbjct:  410 PEPGKFFRETELVSGNTMPMPDIKDKMPPRAF---LPRDIAKKIPFKPNAVS---EVFGVPLDTAMGKAVTSTVAECERAPSRGETKRCATSAEDIVDF--AVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVT-RSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAF 600          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.431e-11
Identity = 57/200 (28.50%), Postives = 86/200 (43.00%), Query Frame = 1
Query:  235 PSTMVFFTLKDLKIGETMPI--YFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRM-ETVALCPLETSHWSPKSAPF 825
            P    FF  +DL  G  MP+     +  P A+   LPR+ A  +PF    +  L   F  +  + + + +  T+  C  PP  GETK CATS E + DF      L       +T+  A      +   +  VP      + V+C    +PY + +C S  T        L  D+ +++   VA+C L+TS WSP    F
Sbjct:  472 PEPGKFFRERDLVAGNRMPMPDIADRTPPRAF---LPRDIAAKIPFDAAAVSAL---FGAAPGTAMRQVVSSTVAECARPPSRGETKRCATSAEDVVDF--AVEMLGDNVVARATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVYEADILAVDSNQKINHGVAICHLDTSDWSPNHGAF 663          
The following BLAST results are available for this feature:
BLAST of DY260042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
BURP8_ORYSJ4.758e-1433.33BURP domain-containing protein 8 OS=Oryza sativa s... [more]
GP3_SOLLC1.296e-1131.44Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC1.296e-1131.44Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP1_SOLLC1.296e-1130.93Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
BURPC_ORYSJ3.770e-1131.00BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPE_ORYSJ6.431e-1128.50BURP domain-containing protein 14 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260042 ID=DY260042; Name=DY260042; organism=Citrus clementina; type=EST; length=972bp
CATATACAGTCCCCTAATCCCCTCCCCTTCTGCTTCACTTGTTATCTGTG
TTTCCTCCCCCTGAAAAAAAAAAGATTACTAAAATACCTAACAAACTTCC
ATAATAGAAAAGAGATGGGGTTACGATTTTCAGCTTGGAACCCCCTTCTT
TCCCTACTCCTTCTGTGTGCTCCGGTGCTTTCGGAGAATCTTCATGATTC
TCATTCCATACCATCCCACATGAATCACATGGACCCTTCAACGATGGTGT
TCTTCACCTTGAAGGATCTAAAGATTGGCGAAACGATGCCGATTTATTTT
CGCAAGAGAGATCCTTCAGCTTATCCTCAGGCTTTGCCTAGAGAAGAAGC
AGATTCCCTTCCATTTTCATTGAAACAACTGCCTTACCTTCTTCAATTCT
TCTCGTTCTCAGATGACTCACCCCTAGCCAAAGCCATGGAAGGGACCCTG
AATCATTGCGAAGTTCCCCCCATCGAAGGAGAAACCAAAATTTGTGCTAC
CTCTTTGGAATCCATGCCTGATTTTGTACACGGAACTTTCCGATTGGAGA
CCAAATTCCAAGTTCTAAGCACAAAATTTCTCGCACAATCACCTACCATT
TTCCAAAATTACACTATTTTACAAGTGCCCAAACCAATGGTTGCCCCCCA
GATGGTGGCATGTCCTATCATGCCCTACCCCTATGCAATCCTCCACTGCC
CCAGCCCAATGACCGAAAACAAATTATTCCGTGTTTCATTAGGTGGTGAT
AATGGAAAAAGAATGGAAACCGTAGCCCTTTGCCCCCTGGAAACCTCCCA
TTGGAGTCCAAAATCTGCCCCCTTTTCCTGTGCCTTGGAACCCAACCAGG
GACCCCCCCCGGTCCCCCCTTTCCTTCCCGGCCGAAAAAATTTGAAACCC
TTCCCCCCCCCCCCCCCCCCTAATTAAAAAAAGTATTGGTAATGGGCCCG
TTACAACCCCAATGGTCAACCC
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