DY260050

Overview
NameDY260050
Unique NameDY260050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1080
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260050_ssr739 microsatellite DY260050_ssr739:739..748. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260050_ssr109 microsatellite DY260050_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1403 contig Ccv1_Contig1403:1..1080. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_SULIL (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.317e-12
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_SULIK (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.317e-12
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_SULIA (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.317e-12
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_PYRKO (50S ribosomal protein L7Ae OS=Pyrococcus kodakaraensis GN=rpl7ae PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.317e-12
Identity = 34/107 (31.78%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            ++L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPY+YV SK++L  A   + P   V ++      EL ++   K+K
Sbjct:   13 QELAEKALEAVEIARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYVYVPSKKELGAAAGLEVPAASVAIIEPGKARELVEDIAMKVK 119          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_SULSO (50S ribosomal protein L7Ae OS=Sulfolobus solfataricus GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.027e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L +IA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_PYRFU (50S ribosomal protein L7Ae OS=Pyrococcus furiosus GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.163e-12
Identity = 35/107 (32.71%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K+K
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVK 119          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_SULTO (50S ribosomal protein L7Ae OS=Sulfolobus tokodaii GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.743e-12
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 389
            L+ + L  VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LCEE  IPY+YV SK+ L  A
Sbjct:   15 LANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVPSKKALGEA 89          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_AERPE (50S ribosomal protein L7Ae OS=Aeropyrum pernix GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.806e-12
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            L+++  + V+RA E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV SK+ L  A   +     V ++       L +E  +K+K
Sbjct:   15 LAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETLVREIVEKVK 119          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_PYRHO (50S ribosomal protein L7Ae OS=Pyrococcus horikoshii GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.150e-11
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K++
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 119          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: RL7A_PYRAB (50S ribosomal protein L7Ae OS=Pyrococcus abyssi GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.150e-11
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K++
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 119          
The following BLAST results are available for this feature:
BLAST of DY260050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RL7A_SULIL2.317e-1235.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIK2.317e-1235.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIA2.317e-1235.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_PYRKO2.317e-1231.7850S ribosomal protein L7Ae OS=Pyrococcus kodakarae... [more]
RL7A_SULSO3.027e-1234.3150S ribosomal protein L7Ae OS=Sulfolobus solfatari... [more]
RL7A_PYRFU5.163e-1232.7150S ribosomal protein L7Ae OS=Pyrococcus furiosus ... [more]
RL7A_SULTO6.743e-1242.6750S ribosomal protein L7Ae OS=Sulfolobus tokodaii ... [more]
RL7A_AERPE8.806e-1233.3350S ribosomal protein L7Ae OS=Aeropyrum pernix GN=... [more]
RL7A_PYRHO1.150e-1131.7850S ribosomal protein L7Ae OS=Pyrococcus horikoshi... [more]
RL7A_PYRAB1.150e-1131.7850S ribosomal protein L7Ae OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260050 ID=DY260050; Name=DY260050; organism=Citrus clementina; type=EST; length=1080bp
CATAACTGAAACCCTAAAAGCCCACCCCCCGGCNCGAGCAANNCACCGAG
AACCGAAAAAAGAAAACGGGAAGCGACAGCGAAGCACACTGAACCCCCCA
TAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACCTC
TAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAGCT
GCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTAT
CCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAA
TTGATGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTCCC
TACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCCGGTGCCACAAA
GAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAAC
TAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGCA
GAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGACGAACTACACTTAA
AGCCAACAAAGATGATTGTGCTTACAGATATGTTTGATTTCGAACCTTCC
CTTTCTAGCTGAGAAATGCACTCCTCTTTTGTCCAAGGTAACATGCACTT
TTGTCTCCGTTGGCCGAAAACGGTTGCGCTTCCTAGTCCCAAAAAACTAA
AAACACACCACAAAACACACCACCAGCAACAACCACCCCACACACACATC
ACCCTAAAACATCATCACCACCCTACCCTCCCCCCTTTCCTCCCACACGT
TCCGAGATCAAGACACCCCGCCACTCCCCCCCCCGCCCGCCCCCCGCACG
CCCCCCATCTTACAAAAAACTACTCATTTCCCCCCCCCCAAAAAAACCCC
CCAACTGCAACGAAACAACAACGCCCAACGTCGCTTCCCGCCCCATTCGC
CGCCCCCCGCCACAATTCCCCTCGTTCTTACATATCTCCCATCGAACTAC
CTTTTGCCTCCTGGTTTACCAACACCTCCCCCCCCCCCGACCTACGGCCC
ACCTGCTTTTCTCCTTCATAGCCGCGCACA
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